Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04594 ATGGAACCTCGTATTGGTAACAAGTTCCGTCTTGGCCGCAAAATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACAAATATTCAGACAAATGAAGAAGTTGCAATTAAGCTTGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTATGAATCAAAGTTGTATAAAGTACTTCAAGGAGGAACTGGTATCCCAAATGTGAGATGGTATGGCGTAGAAGGAGAGTATAATGTTCTTGTGATGGATTTACTAGGACCTAGTCTTGAGGATTTATTCAGTTTTTGTAGTCGGAAATTGTCCCTTAAAACTGTACTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATATATTCATTCCAAATCTTTTTTACATAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTGGGGAGGCGTGCTAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAAAAATACAGAGACACCTCTACCCATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACACATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTCATGTACTTTTTGAGAGGAAGCCTTCCGTGGCAGGGATTGAAAGCAGGTACTAAAAAGCAGAAGTACGAGAAAATCAGTGAGAAAAAAGTTTCTACTTCTATTGAGTCCTTGTGTCGTGGCTACCCCTCAGAATTCGCTTCGTACTTCCATTACTGCCGGTCATTGCGGTTTGATGATAAACCAGATTATGCATATTTGAAAAGGCTTTTTCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGACTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCTCAAATTGCCACGCCTCCTGCACGTGCCATTGGTTCTGGTGCTGGGCCAAGTTCTGGCATACCACCAGCTGTTGTGAGTGCTGATAGACCAACAGGTGGGGAAGAAGGTAGACATGCTGGTTGGTCTTCATCAGATCCTGCTCGTAGAAGAAGCTCTGGACCTATTGCAAATGATGGAAACTTATCTAGACTAAAAGCCCCAGTTCCTAGTGAATCAACTGCATCTAAAGAGGTTATGGTGTCCAGTTCTAGTTTGTTCCGGCCAAGTGGATCTGCAAGGCGAGTAGGTGCTGTTTCCAACAGTCGTGATGCAGTTGTTGGCAGTGAGATTGAACCCTCTCTTCCTCTTGCCAGGGAAGGCAGTCCTGGAGCACTCCTTAAAACCTCTGGAGCACAAAGAAATTCACCCATCACATCATCGGAGCACAAAGGAACATCTTCTGGCAGAAACACATCGAACATAAAGAATTTTGAGTCAACTCTCCGAGGTATTGAGAGCCTGAGTTTCAATGACGAGAAGGTACAGTATTAG 1425 0.426 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKVLQGGTGIPNVRWYGVEGEYNVLVMDLLGPSLEDLFSFCSRKLSLKTVLMLADQMINRVEYIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPARAIGSGAGPSSGIPPAVVSADRPTGGEEGRHAGWSSSDPARRRSSGPIANDGNLSRLKAPVPSESTASKEVMVSSSSLFRPSGSARRVGAVSNSRDAVVGSEIEPSLPLAREGSPGALLKTSGAQRNSPITSSEHKGTSSGRNTSNIKNFESTLRGIESLSFNDEKVQY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04594 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre11g04594 474 CDD STKc_CK1_delta_epsilon 8 282 - -
Trre11g04594 474 MobiDBLite consensus disorder prediction 364 387 - -
Trre11g04594 474 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04594 474 MobiDBLite consensus disorder prediction 306 455 - -
Trre11g04594 474 FunFam Putative Casein kinase I 1 85 - -
Trre11g04594 474 FunFam Casein kinase I isoform delta-like 1 308 - -
Trre11g04594 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04594 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Trre11g04594 474 PANTHER CASEIN KINASE-RELATED 13 380 - -
Trre11g04594 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04594 474 MobiDBLite consensus disorder prediction 425 455 - -
Trre11g04594 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre11g04594 474 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04594 Trre-Chr11 57826888 57831779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04594 7 223 EF-hand Containing Proteins AT2G17890 26.667 2.63e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre11g04594 Pkinase 3.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04594 K02218 - gmx:100778165 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04594 11 57826888 57831779 Trre15g00646 15 4731064 4735784 PCT