Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04591 ATGGGAAATCAGAAGCAGAAGTGGACGGCGGAAGAAGAAGAAGCGTTACAAGTCGGCGTTCAAAGATACGGTGCCGGTAAATGGAAGAACATTCTCCGTGACCCTGAGCTTCAACCTAAACTCAGTAGTCGTTCTAACATTGATCTCAAGGATAAATGGCGGAATTTGAATGTTTTCCCTGGTCAAGCCTCTAATGCTAAAGGTAGTAGGGTAACTCTTAAGGCTAAACCATCTGTTCCGGTTAATGCTACTCCTTCTCCGGTCACCGTCAATGCTGCTCCTGCTACTCCTTCTCCTTCTCCTGCTACTACTCCAGCTCCACTCAATGTTTCTCCTGTACCTCTAACTACTCAATTTCAGACTCCTACTCGTCGCCCTGTTCAAAATGATGACGATGCCAAAATTCCTCCAAAGTACAATTCAATGATATTTGAAGCTTTAACAACAATCAAAGATACCAATGGTTCTGACTTAAGTGCTATTGTTAGCTTCATTGAGCAAAAGCACAACCTTCCTCAAAATCCAAATTTCCGAAAGACGTTAGGTTCAAAGTTAAGAAGGCTTGTCAGTCAAGGGAAACTTGAAAAGGTACAAAATGGTTACAAGATAAAGGATACTTCCATAGGGACAAAGCCAGTCGAAGACACAAAACCACCTGCACCAAAAGAAGAAATGGATCCACCAGTGTCACCTAATACTTTGGCATATGATGAGGCAATGAGAGAAGCTGCCGAAACTGTAGCCATCAGAATTGCTGATGCAGAGCATAAGTCATTTTTGGCTGCTGCGGCAGTCAAGGAGGCAGAAAGATATGCAAAGTTTGATGAGGAAAATGATGCAATGTTAAAGTTTGCAGAAGAGCTTTTAGAAAAATGCAAGCTCGGTGGAAATGTTCGCTTTGCTTGA 906 0.426 MGNQKQKWTAEEEEALQVGVQRYGAGKWKNILRDPELQPKLSSRSNIDLKDKWRNLNVFPGQASNAKGSRVTLKAKPSVPVNATPSPVTVNAAPATPSPSPATTPAPLNVSPVPLTTQFQTPTRRPVQNDDDAKIPPKYNSMIFEALTTIKDTNGSDLSAIVSFIEQKHNLPQNPNFRKTLGSKLRRLVSQGKLEKVQNGYKIKDTSIGTKPVEDTKPPAPKEEMDPPVSPNTLAYDEAMREAAETVAIRIADAEHKSFLAAAAVKEAERYAKFDEENDAMLKFAEELLEKCKLGGNVRFA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04591 301 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Trre11g04591 301 SMART h15plus2 132 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre11g04591 301 MobiDBLite consensus disorder prediction 207 229 - -
Trre11g04591 301 CDD SANT_TRF 6 57 - -
Trre11g04591 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 135 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre11g04591 301 Gene3D - 133 225 IPR036388 -
Trre11g04591 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Trre11g04591 301 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre11g04591 301 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre11g04591 301 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Trre11g04591 301 CDD H15 137 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre11g04591 301 Pfam linker histone H1 and H5 family 137 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre11g04591 301 SMART sant 4 59 IPR001005 -
Trre11g04591 301 MobiDBLite consensus disorder prediction 208 222 - -
Trre11g04591 301 MobiDBLite consensus disorder prediction 92 108 - -
Trre11g04591 301 SUPERFAMILY "Winged helix" DNA-binding domain 136 213 IPR036390 -
Trre11g04591 301 Gene3D - 8 83 - -
Trre11g04591 301 MobiDBLite consensus disorder prediction 59 136 - -
Trre11g04591 301 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Trre11g04591 301 MobiDBLite consensus disorder prediction 109 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04591 Trre-Chr11 57811031 57814969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04591 1 301 Single Myb Histone (SMH) Gene Family AT1G72740 43.279 7.20e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g04591 Linker_histone 5.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04591 K09422 - gmx:778177 267.7