Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04586 ATGGCGTTCCATACCCCCGATCACGAATCAGCTTCCGATTCCAATATCCCAACACGACCCTACAATCCCTACAAAGACCTCGAAGTACCTATTCGAAATCTCTACCAGCTCCCAACCTCACCCGAACACCTTTTCATTGAAGAAGCTCAACGAAAACATCGTTCATGGGGAGAAAGCCTCACTTTCTACACCGGCTGCGGCTACCTCGGCGGTGCAGTTGCCGGCGCCGGCGTAGGCTTCGTCGAAGGAGTTAAATCGTTTGAGAAAGGTGATACCATGAAACTCAGAGTCAATCGGATTCTTAATTCGTCTGGACACGCAGGTCGGACGTGGGGTAACCGGATCGGAGTGATTGCGTTGCTTTACGCCGGTATTGAGAGTGGGATCACGGCGGCGAGAGACACCGACGATGTGTTGAATAGTGTAGCGGCGGGGCTTGGGACCGGTGTGTTGTATCGAGCGGCGAGAGGTGTGAGATCGGCTGCTGTTGCAGGTGCTGTTGGTGGTGTTGTGGTCGGAGTTGCTGTTACGGCGAAGCAAGTGTTGAAACGCTATGTTCCTATATGA 567 0.5309 MAFHTPDHESASDSNIPTRPYNPYKDLEVPIRNLYQLPTSPEHLFIEEAQRKHRSWGESLTFYTGCGYLGGAVAGAGVGFVEGVKSFEKGDTMKLRVNRILNSSGHAGRTWGNRIGVIALLYAGIESGITAARDTDDVLNSVAAGLGTGVLYRAARGVRSAAVAGAVGGVVVGVAVTAKQVLKRYVPI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04586 188 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g04586 188 PANTHER TIM23 34 177 IPR045238 GO:0022857
Trre11g04586 188 Pfam Tim17/Tim22/Tim23/Pmp24 family 62 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04586 Trre-Chr11 57776910 57777476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04586 2 188 Chloroplast and Mitochondria Gene Families AT1G72750 67.895 2.77e-77 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04586 K17794 - gmx:100813158 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04586 11 57776910 57777476 Trre15g00668 15 4910651 4912412 PCT