Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04581 ATGAAGTGCTTATGTGAGAAAGACTCTGCTCATTTAACATCCCACCATGTTTTTGGATGTCCATCATGGGGAACTTCATCTGAATCTGAAGTCCAACAAACATCCATGTCCAAAAGTTTGAGCTTCAAAGTGGAAGCTCTGCCACAAAAATGCCACAATAGTAAGGCGCTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGTCTGGCTCATCACAATCAGGTCAAATTCCTTTTCAGCACAGTTCTTCTACTGGTTCAACAATTAAGAGAACTGAGGAGAATAGTATGGGATGTCTCATTGGGACATCATCATCTATTGGGACTCCAAATCTCACCATCCATCCTCCACTAGTGGATCACCCCCAATCACTTGCGCATATTGCATTCCACTTTGCTGATCCAGGCTACAATGGCCTACTTTCTGCTTCATATGCCCAACAATATAAGGCTTATGGCATCATGTCATCAAACTCTGACCAGCTTCTTCACGGCCAGCTAATGGAAACTGCTCCTGTCCGAGTTCCCTTGCCATCTGATATGACAGAAGAACCCATATATGTGAATTCAAAGCAGTATCATGCTATTCTGAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACATAACAAACTCATCAAGGATCGCAAACCATATCTTCATGAGTCTCGCCATGTACATGCATTAAAGAGAGCTAGAGGTGCCGGTGGCCGCTTTCTCAATGCTAAAAAGCTACAAGAATCAAAACAAACTTCACCAAATCATGGCCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGGAAATATGAGAGAATCTAAAATGCATGATCAAGATGAAAACTACCGAGATGGTGCTTCTGCATCTGACGTTACATATGCATCAAATAAGAATGAAATGTTTCAGCAGCAACAAGAGTTAGAATTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGGAATATGCAGGATTATACAGCTGACAAGAGTGTTGGTGCGAATCAACGCCGACTATCGGTTCTCATGTGA 1047 0.4183 MKCLCEKDSAHLTSHHVFGCPSWGTSSESEVQQTSMSKSLSFKVEALPQKCHNSKALSFQFQEQDSSSTQSSGSSQSGQIPFQHSSSTGSTIKRTEENSMGCLIGTSSSIGTPNLTIHPPLVDHPQSLAHIAFHFADPGYNGLLSASYAQQYKAYGIMSSNSDQLLHGQLMETAPVRVPLPSDMTEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKQTSPNHGQNVSTSYTCLNLNGNMRESKMHDQDENYRDGASASDVTYASNKNEMFQQQQELEFRLCSYPSSQTGRNMQDYTADKSVGANQRRLSVLM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04581 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 187 242 IPR001289 GO:0003700|GO:0006355
Trre11g04581 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 27 312 IPR001289 GO:0003700|GO:0006355
Trre11g04581 348 MobiDBLite consensus disorder prediction 62 94 - -
Trre11g04581 348 ProSiteProfiles NF-YA/HAP2 family profile. 185 245 IPR001289 GO:0003700|GO:0006355
Trre11g04581 348 PRINTS CCAAT-binding transcription factor subunit B signature 219 242 IPR001289 GO:0003700|GO:0006355
Trre11g04581 348 PRINTS CCAAT-binding transcription factor subunit B signature 188 210 IPR001289 GO:0003700|GO:0006355
Trre11g04581 348 SMART cbf3 184 245 IPR001289 GO:0003700|GO:0006355
Trre11g04581 348 Gene3D - 185 246 - -
Trre11g04581 348 ProSitePatterns NF-YA/HAP2 subunit signature. 190 210 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04581 Trre-Chr11 57748196 57750459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04581 10 328 CCAAT-HAP2 Transcription Factor Family AT1G17590 38.872 4.14e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre11g04581 CBFB_NFYA 8.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04581 K08064 - gmx:100500765 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04581 11 57748196 57750459 Trre11g04581 11 57748196 57750459 ECH
Trre11g04581 11 57748196 57750459 Trre15g00685 15 5077544 5079574 PCT