Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04556 ATGGAATACCCGTTTTACCCTAAGGGAAGAGGAATTGGGTATTGGCAGTCTCCTGGAACTCAGTTGGAAGAATCAAGATCATTAGATGGTGGAATCAACAATTTGGTGTCAGAGGATATGCCTAGCAGCTTCTCTGAGCTCATGAACTTTGATACTTATGCTGGTTTGTGTTCTGGTCCATCCATGACCGATCAGATTATGGCTAATGAGCTTCCGTCGCTTGCCTCGGTATTATATCAATCGCCTGATGAATTCAATCTAGTAGAACAAAACACAGGACAATTCCATATGACAGGAGTCGGTGGAAATTACAATAATTCGGAAAGCTCCCCCATTTTTGGGGAGAAAATTGTGCGTCAACAGATGGATAGCCTACTTGGTTTATTAGACAACAACAATGATGCAAATAACTTAAGTTCTAAGCAAAAAATTAACGATTCTTTGCAGCATGTTAATACTTTTGACATGGACAATTGCATAATCTCCAAGCCACCTGCTTTGTCACTTGACGAGAGAATGCTGAAAGCCCTGTCCTTCTTTAAAGAATCAGCTGGTGGTGGAATATTGGCACAAGTTTGGGTACCCATAATGCACGGTGGTCAAGTTTTCTTAACCACTAGCGAGCAACCTTATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTATCAAGGACATTTACATTTTCTACAGAAGGAAAACCAGGTTTTTTACCGGGACTTCCTGGTCGTGTGTTTATCTCTAAAGTTCCTGAGTGGACTTCGAATGTTGGTTACTACAGTCCAAGTGAGTATTTAAGGGTTGAGCATGCAAGAAATCATGATGTTCGTGGATCAATTGCGTTTCCCATATTTGATCTTCACTCTGGACTGCCATGTTGTGCTGTCTTAGAACTTGTCACTACAAAGGAAAAACATGATTTTGACAGAGAATTGGAAATTATTTGTCGTTCACTTCAGCTTGTAAATTTAAGGACTACGATGCCTTTTCGGCTACTTCCTGAGTGTCTTTCGAATAATAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTAAGATCCGTGTGTCATGCACATAGATTGCCACTGGCACTAACATGGATTCCCTGTTTTTACACTGAGGGCACAAGAGATGAAACTACTAGAATACAAATTAAAGAGGGTAATTCAAATTCTAGAGAAAAAAACATACTGTGTATTGAAGAATCAGCTTGCTATATAACTGATAGAGCGATGGAAGGATTTGTGCATGCATGCATTGAACATCCTCTTGAGGAAGGGAAAGGTGTAGCTGGGAAAGCACTTCAATCAAACCATCCTTTCTTCTATTCTGACGTGAAAACATATGATATTAGTGAGTATCCGCTTGTTCATCATGCACGCAAGTTCAATTTGAATGCTGCAGTTGCAATCAGGCTAAGGAGTACTTATACTAATAATGATGATTACATATTGGAATTCTTTCTGCCTATCAATATGAAGGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGCAAGAGTTTGAGGACAGTTTCAGGTGCCGAACTATCAGAAATGGAAAGCTCGCAGGCAGGATTTGAAAAGAACAGTGTCCCGAGTTTTCCCCCCTCGTCTAAGAGAAAATCTCGAATACCGTTTATAAATGAAAACCATGGTTCTGTCCAGAAGCCTTCGTCAAAGGCTTCTAACCTGAGAAACAATGGAAATGAGCCTTCTTCTAACCAGGAAAGAAATGGACCGAGAAGGCGAGCTGAAAAAAGTAGAAGTTCATCCGAGAAAAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGCGTTTGCCCGACAACTCTGAAAAGGATATGCCGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTTGATTCAGTTGAGGGAGTTGAAGGTGGGTTGAAGTTTGATCCTTCCGTGGGGGCATTTGTGACAAAAGGGACAACCATCCAAGAAATTGATGAAAATAGAAGTCTCTTCCCCGAGAAAAGTACTACAGAAGACTCTGAGCCATTTTCACAAGATGTTGCCTCGGTGCCTCCTGCACATTGTAGCGACGGTGAGAATTCAGCAAATAAGTTGGATGGAAAATGGAAGGAAACCAATGCATCCTTGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGGATGATTGTCCTGAACAAGCTTGTTTTGGTTCCGTTCTTGGAAAAGGTGACGAGTGGATTCTGAACAAGGGTGGTTTGAGAGACGAAGAAAAATGTAAACTTAATACTATTGGCCAGAGGACAAGTTCCTTTGCAGTTTATGAGATGGACACTAGTGTGGATGGCGATGATGAAGCTGTTGAGCACAACAATCCTGCTTCTTCAAGCTTGACAGGCTCGTCTAATAGCTCTGGTTCAATGGTACATGACAGTTCATCAGGTTACCAGAACCTTGAGAACCAAAAGCGGTCGAAAAGCAAATCAATCATCGTTGATAGCGGATCAAAAATCGTTGTGAAAGCTACTTACGGAGAAGACACCATCCGCTTCAAGTTTGATCCAGCCACAGGTTGTTTAAAACTATACGAAGAAGTTGCATCAAGGTTCAAACTGCAAAACGGGACATTCCAGCTCAAATATCTAGACGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCGGATTTGCAAGAGTGTTTGGAAATATTGAATGATATGGGGACACGTAATGCAAGGTTTCTTGTTCGCGATACACCTTGTACTTTTGGCAGCTCTGGTAGTAGCGGTTGCTACTTGGGAGGCCGCAGCTCATAG 2898 0.413 MEYPFYPKGRGIGYWQSPGTQLEESRSLDGGINNLVSEDMPSSFSELMNFDTYAGLCSGPSMTDQIMANELPSLASVLYQSPDEFNLVEQNTGQFHMTGVGGNYNNSESSPIFGEKIVRQQMDSLLGLLDNNNDANNLSSKQKINDSLQHVNTFDMDNCIISKPPALSLDERMLKALSFFKESAGGGILAQVWVPIMHGGQVFLTTSEQPYLLDQMLAGYREVSRTFTFSTEGKPGFLPGLPGRVFISKVPEWTSNVGYYSPSEYLRVEHARNHDVRGSIAFPIFDLHSGLPCCAVLELVTTKEKHDFDRELEIICRSLQLVNLRTTMPFRLLPECLSNNKRAALTEIVDVLRSVCHAHRLPLALTWIPCFYTEGTRDETTRIQIKEGNSNSREKNILCIEESACYITDRAMEGFVHACIEHPLEEGKGVAGKALQSNHPFFYSDVKTYDISEYPLVHHARKFNLNAAVAIRLRSTYTNNDDYILEFFLPINMKGSSEQQLLLDNLSGTMQRICKSLRTVSGAELSEMESSQAGFEKNSVPSFPPSSKRKSRIPFINENHGSVQKPSSKASNLRNNGNEPSSNQERNGPRRRAEKSRSSSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVEGVEGGLKFDPSVGAFVTKGTTIQEIDENRSLFPEKSTTEDSEPFSQDVASVPPAHCSDGENSANKLDGKWKETNASLIDCSEDSKSFAMDDCPEQACFGSVLGKGDEWILNKGGLRDEEKCKLNTIGQRTSSFAVYEMDTSVDGDDEAVEHNNPASSSLTGSSNSSGSMVHDSSSGYQNLENQKRSKSKSIIVDSGSKIVVKATYGEDTIRFKFDPATGCLKLYEEVASRFKLQNGTFQLKYLDDEEEWVMLVNDSDLQECLEILNDMGTRNARFLVRDTPCTFGSSGSSGCYLGGRSS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04556 965 MobiDBLite consensus disorder prediction 810 849 - -
Trre11g04556 965 PANTHER PROTEIN NLP8 135 957 IPR045012 GO:0003700
Trre11g04556 965 MobiDBLite consensus disorder prediction 557 584 - -
Trre11g04556 965 ProSiteProfiles RWP-RK domain profile. 583 671 IPR003035 -
Trre11g04556 965 Pfam RWP-RK domain 603 651 IPR003035 -
Trre11g04556 965 SMART PB1_new 864 946 IPR000270 GO:0005515
Trre11g04556 965 Pfam PB1 domain 866 945 IPR000270 GO:0005515
Trre11g04556 965 MobiDBLite consensus disorder prediction 817 849 - -
Trre11g04556 965 SUPERFAMILY CAD & PB1 domains 856 948 - -
Trre11g04556 965 ProSiteProfiles PB1 domain profile. 864 946 IPR000270 GO:0005515
Trre11g04556 965 MobiDBLite consensus disorder prediction 528 602 - -
Trre11g04556 965 CDD PB1_NLP 867 945 IPR034891 -
Trre11g04556 965 Gene3D - 860 945 - -
Trre11g04556 965 MobiDBLite consensus disorder prediction 585 599 - -
Trre11g04556 965 MobiDBLite consensus disorder prediction 528 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04556 Trre-Chr11 57631231 57636601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04556 1 961 NLP Transcription Factor Family AT2G43500 48.156 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre11g04556 PB1 2.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04556 - - gmx:100804426 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04556 11 57631231 57636601 Trre11g04556 11 57631231 57636601 ECH
Trre11g04556 11 57631231 57636601 Trre7g03005 7 27204541 27208286 PCT