Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04543 ATGGAGATAAGTCCTTATAACACTTCAAAGAAAACAACACACATGAAGAAGTTGAACCATCAAAACAATAATTTTATTGTTCAAGAAGCTTCAACAATAGACATGATGCATACATCATCAAGCAATCATCAAACATCTTCAGATTCAAGTGAGACATGTCATCATGATCAAGATGGTAAATGGTCTTCCAAACTTCTCAAAGAGTGTGCAATAGCAATATCTAATAGAGATTCATCCAAAATTCACCATCTTCTTTGGATGTTAAATGAGTTATCTTCACCTTATGGAGATATTGATCAAAAACTAGCTTCATATTTTCTACAAGCTCTTTTTTCTAAGGCAACACAATCTGGTCACAAGTGTTACAAAACACTTTCCTCAATTGCTCACAAAAATCATTCCTTTGATTCATCAAGAAAATTGATTCTCAAGTTTCAAGAGGTAAGTCCATGGACAACTTTTGGACATGTTGCATCAAATGGTGCTATTTTGGAAGCTTTAGAAGGAGAGAAAAAACTTCACATAATTGATATTAGCAATACACTTTGTACTCAATGGCCTACTCTTCTAGAAGCTTTAGCTACAAGAAATGATGAAACACCTCACCTTAAGCTCACAAGTGTTGTCACAAATAATACTTCAAGTGTTGTTGTCATGAAGGAAGTTGGTCAAAGAATGGAGAAATTTGCTAGGTTAATGGGAGTACCTTTTGAATTGAATGTTATTAGTGGTTTGAAACATTTAAGGGAATTAACAAAAGAGAGATTAGGAGTTCAAGAAGATGAAGCAATAGCTTTGAATTGTGTTGGAGCATTGAGAAGAGTTGAAGTTGAAGAAAGAGAAAGTTTGATTCAATTTTTCAAATCTCTTAATCCTAGAGTTGTCACATTTGTTGAGGAAGAAGGTGATTTTGTTAGTAATGATTTTGTTAAATGTTTTGAAGAGTGTCTTAAATTTTATACAATTTATTTTGAGATGTTGGAAGAGAGTTTTCCACCAACAAGTAATGAGAGGTTAATGTTAGAAAGGGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGTGATCATGAATTTGATGGTAATAATATTAATAATGATGATGATGATGATGAAGATGGTGGTGATGATTGTGAGAAAAGAGAAAAAGGAACACAATGGTTTGAAAGGCTTAAGAATGAATTTTCACCTAGTGGATTTAGTGATGATGTTGTGGATGATGTCAAAGCGTTGCTAAAAAGGTATCAAAGTGGTTGGTCACTTGTTGTGCCTCAAGGAGATGATAATCAAACAGGAATTTATCTAAAATGGAAGGAGGAAGCAGTTGTTTGGGCTTCAACATGGAAACCCTAG 1353 0.3385 MEISPYNTSKKTTHMKKLNHQNNNFIVQEASTIDMMHTSSSNHQTSSDSSETCHHDQDGKWSSKLLKECAIAISNRDSSKIHHLLWMLNELSSPYGDIDQKLASYFLQALFSKATQSGHKCYKTLSSIAHKNHSFDSSRKLILKFQEVSPWTTFGHVASNGAILEALEGEKKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTSVVTNNTSSVVVMKEVGQRMEKFARLMGVPFELNVISGLKHLRELTKERLGVQEDEAIALNCVGALRRVEVEERESLIQFFKSLNPRVVTFVEEEGDFVSNDFVKCFEECLKFYTIYFEMLEESFPPTSNERLMLERECSRSIVRVLACDHEFDGNNINNDDDDDEDGGDDCEKREKGTQWFERLKNEFSPSGFSDDVVDDVKALLKRYQSGWSLVVPQGDDNQTGIYLKWKEEAVVWASTWKP 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04543 450 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 439 IPR005202 -
Trre11g04543 450 ProSiteProfiles GRAS family profile. 53 449 IPR005202 -
Trre11g04543 450 Pfam GRAS domain family 64 357 IPR005202 -
Trre11g04543 450 Pfam GRAS domain family 377 449 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04543 Trre-Chr11 57550328 57551680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04543 58 450 GRAS Transcription Factor Family AT4G37650 51.214 8.56e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre11g04543 GRAS 4.1e-82 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04543 - - gmx:100818806 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00756 15 5568768 5570453 Trre11g04543 11 57550328 57551680 PCT