Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04539 ATGGAAAAGGACAAATCTTTGGGTCTTGGGGGTGGTTTTCCACCTCCATCAGGACGTTATTCGGGTTATTCACCTACTGGAAGTGGTTTCAATGTGAAATCTGAACCCTCGCCGTCGGCGTATCCGCCACCTGTTCCTGGAACCAGCTCAGAATCTAGTGGCTTTAGTCATGATATTAGCAGAATGTCTGATAATCCTCCAAGAAATAGAGGTCATAGGCGTGCTCATTCCGAGATTCTTACCTTGCCTGATGATATTAGTTTCGATAGTGACCTCGGTGTAGTTGGTGGTGCTGATGGACCTTCATTCTCTGATGATACTGAGGAGGACTTGCTGTCTATGTATCTTGATATGGATAAGTTCAATTCGTCGTCTGCAACGTCCACATTTCAAATGGGTGAGGGGTCTAATGCTGCGGCAGCATCAGGTTCCGCACCAATGTCAGTAGGGAAGGCATCAGGAACAGGTACCTCTTCTGGGGAAAATATTGCCGGTGGTACTACTAATGAAAGACCCAGAATTAGACACCAGCACAGCCAATCTATGGATGGGTCGACAACCATCAAACCTGAGATGTTAGTTTCGGGTTCAGATGACATGTCTGCAGCTGATTCCAAAAAAGCAATGTCAGCAGCCAAGCTTGCAGAACTTGCCTTGATTGATCCCAAGCGTGCAAAAAGGATCTGGGCAAATAGGCAGTCTGCGGCAAGGTCAAAAGAGAGGAAGATGCGCTATATTGCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACGGAGGCAACATCTTTGTCTGCACAATTAACTCTATTGCAGAGAGATACAAGCGGACTGAATTCTGAGAACAGTGAGCTGAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAGGATGCTTTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAAGTATTGACTGGGCAAGCTATACCACCAAATGGAGGACCTATGATGAACTTTGCTTCTTTTGGAGGGGGACAGCAGTTCTATCCCAATAATAATCATTCCATGCACACTCTTTTAGCTGCACAACAGTTTCAACATCTCCAAATTCATCCTCAGAAGCAGCAGCAGCATCAGTTTCAGCAACAAATACAACAGCAACAACAAATACAGCAGCAACAAATGCAGCAGCAGCAGCAGCAGCAGGAACAACAGCAACATCAACATCAACAGCAACAACAACAATCAGGCGACTTGAAAATGAGAGCAACTACACCTCCATGCCCCAATGATAATCCTTCATCAGATGCAAATCCTTCGGCGGCCAAGGATTGTTGA 1311 0.4531 MEKDKSLGLGGGFPPPSGRYSGYSPTGSGFNVKSEPSPSAYPPPVPGTSSESSGFSHDISRMSDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSTFQMGEGSNAAAASGSAPMSVGKASGTGTSSGENIAGGTTNERPRIRHQHSQSMDGSTTIKPEMLVSGSDDMSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTSGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAIPPNGGPMMNFASFGGGQQFYPNNNHSMHTLLAAQQFQHLQIHPQKQQQHQFQQQIQQQQQIQQQQMQQQQQQQEQQQHQHQQQQQQSGDLKMRATTPPCPNDNPSSDANPSAAKDC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04539 436 MobiDBLite consensus disorder prediction 136 166 - -
Trre11g04539 436 MobiDBLite consensus disorder prediction 136 188 - -
Trre11g04539 436 SUPERFAMILY Leucine zipper domain 223 274 IPR046347 GO:0003700|GO:0006355
Trre11g04539 436 MobiDBLite consensus disorder prediction 21 35 - -
Trre11g04539 436 Pfam bZIP transcription factor 223 281 IPR004827 GO:0003700|GO:0006355
Trre11g04539 436 FunFam probable transcription factor PosF21 222 275 - -
Trre11g04539 436 MobiDBLite consensus disorder prediction 46 62 - -
Trre11g04539 436 MobiDBLite consensus disorder prediction 388 436 - -
Trre11g04539 436 Coils Coil 239 308 - -
Trre11g04539 436 SMART brlzneu 219 283 IPR004827 GO:0003700|GO:0006355
Trre11g04539 436 CDD bZIP_plant_RF2 224 273 IPR044759 GO:0003700|GO:0006355
Trre11g04539 436 MobiDBLite consensus disorder prediction 63 80 - -
Trre11g04539 436 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 284 IPR004827 GO:0003700|GO:0006355
Trre11g04539 436 Gene3D - 222 285 - -
Trre11g04539 436 Coils Coil 372 406 - -
Trre11g04539 436 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 40 385 - -
Trre11g04539 436 MobiDBLite consensus disorder prediction 388 430 - -
Trre11g04539 436 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04539 Trre-Chr11 57505608 57508700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04539 19 353 bZIP Transcription Factor Family AT1G06070 72.997 2.61e-167 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre11g04539 bZIP_1 2.3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04539 - - psat:127087280 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04539 11 57505608 57508700 Trre11g04539 11 57505608 57508700 ECH