Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04535 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCAGCAACAATGATTTGTTGTGCTGATGAAGCAGCTTTATGTGCTAAATGTGACATTGAAGTTCATGCTGCTAACAAACTTGCAAGCAAGCACCAAAGGCTTCATCTTCAATCTCTCTCTAGCAAGCTTCCTAGATGTGACATATGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAGGACAGAGCACTCTTCTGTGAGGATTGTGATGATTCTATTCATTTAGCCGGTAGTCTTTCCGCAAACCACCAGCGCTTCCTTGCTACCGGTATCCGAGTGGCTATGAGTTCTAGTTGCGCCAAAGACGACGAAAAAACTCACTTGGAGCCACCTAATAGGAAGAACACAGAACAAGTTTCTCTTGAAACACCTTCTCAGCAAGTACCTGACTTTACACCCTCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGATTTTGATTCCCATGACAAAAAGGGATCCATGCAATTTGGAGAGATGGAATGGTTCACTGAGGATGGTCTTTTTGGTGAAGAATTTACTCAAGAAGCTATGGCTGCTGCTGAAGTGCCTCAGCTTCCAATGACTTATGCTAGCAACAATTTTTCATCACATAGAAATTCCAAGTCATACATGTCTAACAAAAAGCCTAGAATTGAACTCATACATGATTATAATTATGATGATGAAGATGAGTTGTTCACTGTGCCTGATCTTGGATGA 735 0.4122 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRLHLQSLSSKLPRCDICQDKAAFIFCVEDRALFCEDCDDSIHLAGSLSANHQRFLATGIRVAMSSSCAKDDEKTHLEPPNRKNTEQVSLETPSQQVPDFTPSWGVDDLLELADFDSHDKKGSMQFGEMEWFTEDGLFGEEFTQEAMAAAEVPQLPMTYASNNFSSHRNSKSYMSNKKPRIELIHDYNYDDEDELFTVPDLG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04535 244 Gene3D Classic Zinc Finger 1 93 - -
Trre11g04535 244 CDD Bbox1_BBX-like 5 47 - -
Trre11g04535 244 MobiDBLite consensus disorder prediction 124 139 - -
Trre11g04535 244 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Trre11g04535 244 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Trre11g04535 244 CDD Bbox1_BBX-like 57 98 - -
Trre11g04535 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
Trre11g04535 244 SMART bboxneu5 52 99 IPR000315 GO:0008270
Trre11g04535 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre11g04535 244 MobiDBLite consensus disorder prediction 113 139 - -
Trre11g04535 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04535 Trre-Chr11 57478008 57479589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04535 1 162 Orphan Transcription Factor Family AT1G06040 64.327 2.30e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g04535 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04535 - - vun:114183169 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04535 11 57478008 57479589 Trre11g04535 11 57478008 57479589 ECH
Trre11g04535 11 57478008 57479589 Trre7g03028 7 27526729 27528848 PCT