Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04525 ATGGCAGAAACCAGTGAGAAACATGACAAAGTAGATGGCAACATTTCAAACAATTTAGAATTATGTGCAGTTGAAGATGAAAGGTTTGTTGAACAACCTGTGGCAGATTCAGACATAATAGAACCATTCATAGGCATGGAGTTCAACACAAGAGAGGAAGCCAGAGAGTTCTACAATGCCTATGGTAGACGGATTGGATTTACAGTACGAGTACACCATAACCGCCGTTCACGAGTTAATAACGAGGTTATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGCTATCGAGCAAAGAAGTATGTGCACAGAAAAGATAGAGTGCTCCCTCCTCCACCACCCACCCGAGAAGGTTGTCAAGCCATGGTAAGGATGACTTTACAAGATGGAGGGAAGTGGGTTGTCACCAAATTTGAGAAGGAGCATACACATAAACTGATGAGTCCTAGTGAAGTTCCATGGCGAAGATCTGAGAAGCACCTGATTACTGAGGATGAGAAAGATAGGAGAATCCGTGCGCTATCACTCGAGTTGTACAACGAAAGGCAAAAGAACAAACGACGTTGTGCAGCATATGAAGAACAGATAAATATGATTCTGAATGACGTGGAAAAGCACACAGAACACATCTCTAAAAAAGTTGCTGATGTAGTTCGAAATATAAGAGAGATTGAGGAAGAAAAATCAGAGTCAAATGGAAGGTAA 702 0.4145 MAETSEKHDKVDGNISNNLELCAVEDERFVEQPVADSDIIEPFIGMEFNTREEAREFYNAYGRRIGFTVRVHHNRRSRVNNEVIGQDFVCSKEGYRAKKYVHRKDRVLPPPPPTREGCQAMVRMTLQDGGKWVVTKFEKEHTHKLMSPSEVPWRRSEKHLITEDEKDRRIRALSLELYNERQKNKRRCAAYEEQINMILNDVEKHTEHISKKVADVVRNIREIEEEKSESNGR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04525 233 Pfam FAR1 DNA-binding domain 56 146 IPR004330 -
Trre11g04525 233 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 16 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04525 Trre-Chr11 57415524 57416428 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g04525 FAR1 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04525 - - gmx:100810283 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04525 11 57415524 57416428 Trre11g04525 11 57415524 57416428 ECH