Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04516 ATGACGAAGGTCTCCCACAACTTCGATGATGCATTGGCGTATGTTAAGGCATATAATAGGAAAAAGTATGATGAGTTTTTAAACATCGTACATGATTTGAAATTGAAGAAGGGTGGAAGAAGAAGAAGAATTGCTACAAGAATGAAGATGTTGTTTGAAGGCCATTCGGATTTAATTTTGGGATTCAACACCTTAATGCCAATGGAATATCAAATCAAACTTTCTCAGAATAATGGAATAAATGTGAAGATTGTACATCTTTTATAA 267 0.3333 MTKVSHNFDDALAYVKAYNRKKYDEFLNIVHDLKLKKGGRRRRIATRMKMLFEGHSDLILGFNTLMPMEYQIKLSQNNGINVKIVHLL 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04516 88 Gene3D Paired amphipathic helix 1 67 IPR036600 GO:0006355
Trre11g04516 88 ProSiteProfiles PAH domain profile. 4 69 IPR003822 GO:0006355
Trre11g04516 88 SUPERFAMILY PAH2 domain 6 70 IPR036600 GO:0006355
Trre11g04516 88 PANTHER SIN3B-RELATED 9 77 IPR039774 GO:0003714
Trre11g04516 88 Pfam Paired amphipathic helix repeat 22 64 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04516 Trre-Chr11 57383457 57386210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04516 10 74 WRKY Transcription Factor Family AT4G12020 45.714 1.93e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g04516 PAH 6.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04516 K11644 - tpra:123915142 103.219