Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04508 ATGGATTCCGAAGATGATATGCACGATGCCAACGATATTGAGTCTCTCGATGACGATTTCTACAGTGGTGAAACCGAAGATGTTCCTATGGATTTCTGCAGCGACTATGATGATGATGATGATGATGCTGATGATTACTTTGATGATGGTGATGATTCTGACCCTGCTGAGTCTCGTCGAACCGAGCAAAGTTTTACCATATTGAAAGAATCAGATATACGTCAACGGCAGGAAGATGATATCAGTAGAGTAGCAGCAGTTCTTTCCATACCGCAGGTTGCTGCAAGCATCCTACTTCGTCATTATAATTGGAGCGTCAGTAGGGTCAATGATGCTTGGTTTGCTGACGAAGGTGAAGTTCGAAGAACAGTTGGTTTGTTGGAGAAGCCAGTTTACGAGAATCCTGATGTTGAAGAGCTTACTTGTGGCATCTGTTTTGAAGATTACCCTCCTTCTAAGATTCAAACGGCTTCTTGTGGTCATCCATTCTGTTTTACATGCTGGGGAGGATATATTGGGACTTCAATTAACGATGGTCCGGGATGCTTGATGCTGAGATGTCCTGATCCCGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTGATGAAGATAAAGAGAAATATGATCGTTACCTTCTTAGATCTTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTTGATGCCGGAACTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAAGAGGCTCACCGTCCAGTGGATTGTGGCACCGTGTCAAAGTGGATTCTAAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGAGACCGATCGAAAAAAACCAAGGATGCATGCATATGACATGTACTCCACCCTGTAAATTCGAATTTTGCTGGCTATGCCTTGGTGCATGGACAGAACATGGTGAAAGGACCGGAGGGTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGGGTGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCATTGGAGCGGTACACACATTATTATGAGCGATGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACAACAGATGCAAACTGTTCATCTTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGACGCAGCTTAAGTTCATAACTGACGCCTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTACCCGATAATGAACATGCTAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTCCAAGTATTCCTCAGTGGTGATGAACCATCTAAAGAATTCAATGATTTTCGTACAAAACTAGCTGGATTGACCACTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAAGGGTTTATGTGATGTGGATAGCAATGAAGCTGCTTCCAGCGAAGCAACAAGTTCAAAAATTGCTGCAGGGAGCAGTAAGGGAAAAGGCGGAAGAGGAAAGGGGACACCTAAAGCTAGCTTGTCCAGCAGAATAACTGATGATCATTGGTCTTGTGAGCAATGTACCTATGCAAACGTCAAATCTGCCACCGCATGCCAGGTGTGCAATCATCAGCGTCGATGA 1779 0.4295 MDSEDDMHDANDIESLDDDFYSGETEDVPMDFCSDYDDDDDDADDYFDDGDDSDPAESRRTEQSFTILKESDIRQRQEDDISRVAAVLSIPQVAASILLRHYNWSVSRVNDAWFADEGEVRRTVGLLEKPVYENPDVEELTCGICFEDYPPSKIQTASCGHPFCFTCWGGYIGTSINDGPGCLMLRCPDPACGAAVDQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDAGTGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWTEHGERTGGFYACNRYEAAKQEGVYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHLEKLSDTQCQPETQLKFITDAWLQIVECRRVLKWTYAYGYYLPDNEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLSGDEPSKEFNDFRTKLAGLTTVTRNYFENLVRALEKGLCDVDSNEAASSEATSSKIAAGSSKGKGGRGKGTPKASLSSRITDDHWSCEQCTYANVKSATACQVCNHQRR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04508 592 SUPERFAMILY RING/U-box 292 340 - -
Trre11g04508 592 SMART zf_4 566 590 IPR001876 -
Trre11g04508 592 Pfam IBR domain, a half RING-finger domain 290 337 IPR002867 GO:0008270
Trre11g04508 592 Pfam IBR domain, a half RING-finger domain 211 273 IPR002867 GO:0008270
Trre11g04508 592 MobiDBLite consensus disorder prediction 1 63 - -
Trre11g04508 592 SUPERFAMILY RING/U-box 211 280 - -
Trre11g04508 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 223 IPR013083 -
Trre11g04508 592 ProSiteProfiles Zinc finger RanBP2 type profile. 564 592 IPR001876 -
Trre11g04508 592 CDD BRcat_RBR_ANKIB1 218 282 - -
Trre11g04508 592 MobiDBLite consensus disorder prediction 533 560 - -
Trre11g04508 592 SUPERFAMILY Ran binding protein zinc finger-like 565 591 IPR036443 -
Trre11g04508 592 MobiDBLite consensus disorder prediction 1 52 - -
Trre11g04508 592 ProSiteProfiles TRIAD supradomain profile. 138 351 IPR044066 -
Trre11g04508 592 SMART ibrneu5 286 347 IPR002867 GO:0008270
Trre11g04508 592 SMART ibrneu5 211 273 IPR002867 GO:0008270
Trre11g04508 592 CDD Rcat_RBR_ARI7-like 296 350 - -
Trre11g04508 592 ProSiteProfiles Zinc finger RING-type profile. 142 186 IPR001841 -
Trre11g04508 592 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 72 439 IPR031127 GO:0004842|GO:0016567
Trre11g04508 592 FunFam RBR-type E3 ubiquitin transferase 136 225 - -
Trre11g04508 592 Pfam Ariadne domain 360 521 IPR045840 -
Trre11g04508 592 SUPERFAMILY RING/U-box 138 223 - -
Trre11g04508 592 ProSitePatterns Zinc finger RanBP2-type signature. 568 587 IPR001876 -
Trre11g04508 592 Gene3D - 269 524 - -
Trre11g04508 592 Gene3D - 562 592 - -
Trre11g04508 592 FunFam RBR-type E3 ubiquitin transferase 274 524 - -
Trre11g04508 592 CDD RING-HC_ARI6-like 139 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04508 Trre-Chr11 57329298 57335201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04508 17 591 ARIADNE family AT1G65430 69.828 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04508 K11968 - gmx:100810427 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04508 11 57329298 57335201 Trre11g04508 11 57329298 57335201 ECH
Trre11g04508 11 57329298 57335201 Trre7g03062 7 27920229 27927070 PCT