Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04496 ATGTTTATTGCAGGGAAAGGCAAGGGGAAGAAGAAGGAAGAAAGAAGCAACCGTCAAGCTCTTGGAGATATTGGTAATCTTGAGGGGAATCAGGTTTCAAGACCCATCACAAGGAATTTCCATAAAAAATTATTGGAAAAAGCAGAAGCTGCAGCTAACTCGGCACCAGAATTAGAAGTCCCGGCTAATTATGACCAAGGAGTTGCACTAAGCAATCAAAATGTTGGTGATGATTGCGCTCAAAAGCCAAATCCTGAGGCCGTACATGTCGACAGTTCTGAAGCAGGAGAAAAACTTAATTTAGTTCCTAAAAAAGAGAGCAGTGGAAGATCTTCTAGGGAGGACCGGATTCTGAATTCGCCACTTACTACAAAAAGCAAGTTTAATATGCCTAATGTATATTCTCACAATGTTGGCAATGATTGTGCTCAAAAGCCAAATCCTGAGCCTGTAGATGTCGATAGTTCTGAAGCAGGAGAAAAACTTGATTCAGTTCCTAAAAAAGAAGGCAGCGGAAGATCTTCTAGGAAGGACAAGATTCCGAATTTGCCACCTCCTACAAAAAGCAAGATTGCTCGCAGATTGATTGAGCCCGAGGATCAGCCTGTTGACATGGATGCAGATGATGATATTAATAATTTAGCAGCAGATGAATATGTCGATGAACTATACAATTTCTACAAGCTAACAGAAGAAGAAAATCGAGCTTCGGACTACATGGAATTACAGAAGGAAATCACCGCTAAGATGAGGACTATTGTCGTGGACTGGTTGGTTGAAGTTCATCATCATTTTAAATTGAAGACAGAAACACTCTTTCTTAACATTAACATAATTGATAGATACCTCTCATTGATTAATGTACCAAAAAAAGAGCTACAGTTAGTTGCAATATGCTCAATGTCCTTAGCTTGCAAATATGAAGAAGTATCACATCCTAAGGTAAAGGATTTTTTGGATATATCAGATAAATTTTATAACAGAAGCCAGTTTATTGCAAGGGAGAAAGATATTGTCGAAAAGCTTCAATGGAATTTTACAGTAACTACACCTTATGTATTTTTAGTTCGACTTATTAGAGCATCTATTGTTCAAGATAAAGAGATGGAGAACATGGCATTTTACCTAGCAGAACTTGGTCTTGCAAATTATTATGTCATGGTATTATTCTCGCCTTCGCAGATTGCTGCAGCAGCTGTTTACTCCGCTCGTTGTATACTCAATAGGATTCAATATTGGAATCAATATCTACAGAACCTATCTGGTTACTGCAAAGAAGAAATCAAAGATTGCGCGAAGCTATTAGTGAGGATACACACAAGTGCAGCAGATGGTAAAACCAAATCAGTGTACAACAAATTCTCAAGTCCTAGGAAAGGTCACATTGCTCTTTTACCACAGCCGCGTAGCATCGAAGAAATATTGTAG 1428 0.3845 MFIAGKGKGKKKEERSNRQALGDIGNLEGNQVSRPITRNFHKKLLEKAEAAANSAPELEVPANYDQGVALSNQNVGDDCAQKPNPEAVHVDSSEAGEKLNLVPKKESSGRSSREDRILNSPLTTKSKFNMPNVYSHNVGNDCAQKPNPEPVDVDSSEAGEKLDSVPKKEGSGRSSRKDKIPNLPPPTKSKIARRLIEPEDQPVDMDADDDINNLAADEYVDELYNFYKLTEEENRASDYMELQKEITAKMRTIVVDWLVEVHHHFKLKTETLFLNINIIDRYLSLINVPKKELQLVAICSMSLACKYEEVSHPKVKDFLDISDKFYNRSQFIAREKDIVEKLQWNFTVTTPYVFLVRLIRASIVQDKEMENMAFYLAELGLANYYVMVLFSPSQIAAAAVYSARCILNRIQYWNQYLQNLSGYCKEEIKDCAKLLVRIHTSAADGKTKSVYNKFSSPRKGHIALLPQPRSIEEIL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04496 475 PANTHER CYCLINS 173 453 IPR039361 -
Trre11g04496 475 Pfam Cyclin, N-terminal domain 224 346 IPR006671 -
Trre11g04496 475 MobiDBLite consensus disorder prediction 69 206 - -
Trre11g04496 475 Pfam Cyclin, C-terminal domain 350 467 IPR004367 -
Trre11g04496 475 PIRSF Cyclin_A_B_D_E 135 473 IPR046965 GO:0016538|GO:0044772
Trre11g04496 475 PIRSF Cyclin_A_B_D_E 3 165 IPR046965 GO:0016538|GO:0044772
Trre11g04496 475 MobiDBLite consensus disorder prediction 154 176 - -
Trre11g04496 475 SUPERFAMILY Cyclin-like 214 346 IPR036915 -
Trre11g04496 475 Gene3D - 341 473 - -
Trre11g04496 475 MobiDBLite consensus disorder prediction 1 19 - -
Trre11g04496 475 SMART cyclin_7 256 340 IPR013763 -
Trre11g04496 475 SMART cyclin_7 353 437 IPR013763 -
Trre11g04496 475 Gene3D - 236 340 - -
Trre11g04496 475 SMART Cyclin_C_2 349 468 IPR004367 -
Trre11g04496 475 SUPERFAMILY Cyclin-like 350 470 IPR036915 -
Trre11g04496 475 MobiDBLite consensus disorder prediction 114 142 - -
Trre11g04496 475 MobiDBLite consensus disorder prediction 98 113 - -
Trre11g04496 475 MobiDBLite consensus disorder prediction 1 35 - -
Trre11g04496 475 FunFam G2/mitotic-specific cyclin 235 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04496 Trre-Chr11 57213274 57216438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04496 188 466 Core Cell Cycle Gene Families AT2G26760 47.312 9.67e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04496 K21777 - jre:109013760 337.421