Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04495 ATGTTTATTGCAGGGAAAGGCAAGGGGAAGAAGAAGGAAGAAAGAAGCAACCGTCAAGCTCTTGGAGATATTGGTAATCTTGAGGGGAATCAGGTTTCAAGACCCATCACAAGGAATTTCCATAAAAAATTATTGGAAAAAGCAGAAGCTGCAGCTAACTCGGCACCAGAATTAGAAGTCCCGGCTAATTATGACCAAGGAGTTGCACTAAGCAATCAAAATGTTGGTGATGATTGCGCTCAAAAGCCAAATCCTGAGGCCGTACATGTCGACAGTTCTGAAGCAGGAGAAAAACTTAATTTAGTTCCTAAAAAAGAGAGCAGTGGAAGATCTTCTAGGGAGGACCGGATTCTGAATTCGCCACTTACTACAAAAAGCAAGATTGCTCGCAGATTGATTGAGCCCGAGGATCAGCCTGTTGACATGGATGCAGATGATGATATTAATAATTTAGCAGCAGATGAATATGTCGATGAACTATACAATTTCTACAAGCTAACAGAAGAAGAAAATCGAGCTTCGGACTACATGGAATTACAGAAGGAAATCACCGCTAAGATGAGGACTATTGTCGTGGACTGGTTGGTTGAAGTTCATCATCATTTTAAATTGAAGACAGAAACACTCTTTCTTAACATTAACATAATTGATAGATACCTCTCATTGATTAATGTACCAAAAAAAGAGCTACAGTTAGTTGCAATATGCTCAATGTCCTTAGCTTGCAAATATGAAGAAGTATCACATCCTAAGGTAAAGGATTTTTTGGATATATCAGATAAATTTTATAACAGAAGCCAGTTTATTGCAAGGGAGAAAGATATTGTCGAAAAGCTTCAATGGAATTTTACAGTAACTACACCTTATGTATTTTTAGTTCGACTTATTAGAGCATCTATTGTTCAAGATAAAGAGATGGAGAACATGGCATTTTACCTAGCAGAACTTGGTCTTGCAAATTATTATGTCATGGTATTATTCTCGCCTTCGCAGATTGCTGCAGCAGCTGTTTACTCCGCTCGTTGTATACTCAATAGGATTCAATATTGGAATCAATATCTACAGAACCTATCTGGTTACTGCAAAGAAGAAATCAAAGATTGCGCGAAGCTATTAGTGAGGATACACACAAGTGCAGCAGATGGTAAAACCAAATCAGTGTACAACAAATTCTCAAGTCCTAGGAAAGGTCACATTGCTCTTTTACCACAGCCGCGTAGCATCGAAGAAATATTGTAG 1239 0.3826 MFIAGKGKGKKKEERSNRQALGDIGNLEGNQVSRPITRNFHKKLLEKAEAAANSAPELEVPANYDQGVALSNQNVGDDCAQKPNPEAVHVDSSEAGEKLNLVPKKESSGRSSREDRILNSPLTTKSKIARRLIEPEDQPVDMDADDDINNLAADEYVDELYNFYKLTEEENRASDYMELQKEITAKMRTIVVDWLVEVHHHFKLKTETLFLNINIIDRYLSLINVPKKELQLVAICSMSLACKYEEVSHPKVKDFLDISDKFYNRSQFIAREKDIVEKLQWNFTVTTPYVFLVRLIRASIVQDKEMENMAFYLAELGLANYYVMVLFSPSQIAAAAVYSARCILNRIQYWNQYLQNLSGYCKEEIKDCAKLLVRIHTSAADGKTKSVYNKFSSPRKGHIALLPQPRSIEEIL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04495 412 SUPERFAMILY Cyclin-like 287 407 IPR036915 -
Trre11g04495 412 SMART Cyclin_C_2 286 405 IPR004367 -
Trre11g04495 412 Pfam Cyclin, N-terminal domain 161 283 IPR006671 -
Trre11g04495 412 SMART cyclin_7 290 374 IPR013763 -
Trre11g04495 412 SMART cyclin_7 193 277 IPR013763 -
Trre11g04495 412 Gene3D - 173 277 - -
Trre11g04495 412 PIRSF Cyclin_A_B_D_E 3 410 IPR046965 GO:0016538|GO:0044772
Trre11g04495 412 MobiDBLite consensus disorder prediction 1 19 - -
Trre11g04495 412 FunFam G2/mitotic-specific cyclin 172 284 - -
Trre11g04495 412 SUPERFAMILY Cyclin-like 151 283 IPR036915 -
Trre11g04495 412 Pfam Cyclin, C-terminal domain 287 404 IPR004367 -
Trre11g04495 412 PANTHER CYCLINS 115 390 IPR039361 -
Trre11g04495 412 MobiDBLite consensus disorder prediction 98 113 - -
Trre11g04495 412 Gene3D - 278 410 - -
Trre11g04495 412 MobiDBLite consensus disorder prediction 73 117 - -
Trre11g04495 412 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04495 Trre-Chr11 57213274 57216438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04495 3 403 Core Cell Cycle Gene Families AT2G26760 39.950 3.33e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04495 K21777 - jre:109013760 359.377