Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04489 ATGGATTCTTCAATTGTAATGGTTAACACAATTTCAGAACCTAATGATGAAATGGAATTTGAATCTCATGAAACTGCATATACATTTTACAAAGAATATGCAAAATCTGTAGGGTTTGGTACTGCTAAGTTAAGTAGTCGTCGATCTAGGTCATCGAAGGAATTTATCGATGCTAAGTTTTCGTGTATAAGATATGGTAATAAGCAACAATCGGACGATGCGATTAATCCGCGTCCTTCGCCGAAAATTGGTTGTAAAGCAAGTTTGCATGTGAAGAGAAGACAGGATGGTAAATGGTATGTTTATAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCTGCTCAAGCTCATTTCTTTCGAAGTCATCGGAATTCTGATCCGTTAAGTAATGATGTTCGGATGCGACGGAGGAAGAACTCAACTGCAGGTGGTAAATTGTTTAGTGCGTATCAGAATGTTGATTGTTTAGAGAATTTTATGAATCGTCAGCAGGATAAAGGGCGTAGTTTGGTTTTAGAACCGGGGAATGCTCAATTGCTTCTTGAATTATTCATGCATATGCAGGAAGAGAATCCTAAATTCTTCTATGCAGTTGATTTGAATGAAGAGCATCGACTTAGAAATGTGTTTTGGGTTGATTCTAAAGGGTTGGAAGATTTTGGCTATTTCTCTGATGTTGTTTCTTTTGACACAACATATTTCACAAGCAAGTATAAAATACCATTGGTGCTTTTCATTGGAGTTAACCATCATATGCAACCAACATTGCTTGGATGTGCATTGATAGCTGATGAGTCGGTATTTACTTTTGCTTGGTTACTGCAAACGTGGTTTATAGCAATGGGGGAACATGCTCCACAAGTGATTCTGACCGACCAAAACGATGCTCTTAAAGCTGCTGTCGCTGCTGTTTTTCCAGAAACGCGTCATTGTTTTTGTTTGTGGCATGTTTTAGAAAAAATACCGAAACAGCTTGAATTTTTAAGTACATGGCATGATAGCTTTATGGAAAAGTTTAACAAATGTATATATCAATCATGGACAGAGGACCAATTTGAAAAGAGATGGTGGAAGCTGGTTGATAGGTTTAAACTTAGAGATATTAAGTGGGTCCAATCCTTGTATGATGATCGAGCAAGTTGGGTGCCAACTTTTATCAGGGATATTTCTTTTGCTGGCTTGTCTACTAGCTCGCGCTCAGAAAGTTTAAATTCTTTTTTTGATAAATATGTCCAAGTTGATACTTCATTGAGAGAATTTATAGAACAGTACCAACTGATTCTTGAAGATAGACATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTAAAGTCTCCTTCCCCTTTTGAAAAACAATTGTTGTTAGTTTATACACATGAAATCTATCAAAAGTTTCAGTATGAGGTTTTGGGTGCTTCTGCTTGCCATCTAAAGAAAGAAAATGATGGCGTGATTACTACTTATGATGTGAAAGATTTTGAAAATAATCAGAACTACATGGTAGAATGGAACACATCAAACTCAGATATATGTTGTTCCTGTCACTTGTTTGAATATAAAGGTTACCTCTGTAGACATGCAATTGTTGTTCTACAAATGTCTGGTGTGTTTAGCATCCCGCCAAAGTATATATTGAAAAGATGGACAAATGCTGCTTTAAGTAGGTATCCTATTGGTGAAAAATTGAAAGAGGTTCAATCCAAGGTCCGGAGATTCAATGATTTATGCAGACGAGCCATAATATTGGGTGAAGAAGGTTCTTTATCCCAAGAAAGTTACTATATGGCTTTAGGTGCCTTAAGTGAAGCTCTAAAGCAATGTGCAAATTTGAACAACTCTGTTGAGAATGCAGCATTAGCTACCCATGTTGGTTGCAATGATGAAGAAGAGTATCATTCTATTACTACATCTAATGATAAGGTCTCTGATCCAAAAATGAATACGGGTAAGAAGGCTGCGAGGACTGGTGTGGCTGGTAGGAGTCTAGGAAGTGTTGAAAACATCGAAGGAAATAAAAGAAAGGTGCCTCAGCTTGGAGCAGTAAGTGGTAGCAACGATGGTTTTCAACAAATGGAGCGTACTGATCTTAGGTCACATAATGCCATGCCAATGCCAATGCAGTTTCACAGCATGTTGCCGGTAGCTATGTTCCATAATGTTTCGTCCCCCTTTCACACTGCAACCTCAACTCATTTGCATGACAATCATCTTCCTCCTTAG 2241 0.378 MDSSIVMVNTISEPNDEMEFESHETAYTFYKEYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASLHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRNSDPLSNDVRMRRRKNSTAGGKLFSAYQNVDCLENFMNRQQDKGRSLVLEPGNAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDSKGLEDFGYFSDVVSFDTTYFTSKYKIPLVLFIGVNHHMQPTLLGCALIADESVFTFAWLLQTWFIAMGEHAPQVILTDQNDALKAAVAAVFPETRHCFCLWHVLEKIPKQLEFLSTWHDSFMEKFNKCIYQSWTEDQFEKRWWKLVDRFKLRDIKWVQSLYDDRASWVPTFIRDISFAGLSTSSRSESLNSFFDKYVQVDTSLREFIEQYQLILEDRHEEEAKANFDAWHETPELKSPSPFEKQLLLVYTHEIYQKFQYEVLGASACHLKKENDGVITTYDVKDFENNQNYMVEWNTSNSDICCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILKRWTNAALSRYPIGEKLKEVQSKVRRFNDLCRRAIILGEEGSLSQESYYMALGALSEALKQCANLNNSVENAALATHVGCNDEEEYHSITTSNDKVSDPKMNTGKKAARTGVAGRSLGSVENIEGNKRKVPQLGAVSGSNDGFQQMERTDLRSHNAMPMPMQFHSMLPVAMFHNVSSPFHTATSTHLHDNHLPP 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04489 746 Pfam MULE transposase domain 227 320 IPR018289 -
Trre11g04489 746 Pfam FAR1 DNA-binding domain 28 114 IPR004330 -
Trre11g04489 746 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Trre11g04489 746 MobiDBLite consensus disorder prediction 642 665 - -
Trre11g04489 746 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 616 IPR031052 GO:0006355
Trre11g04489 746 Coils Coil 607 627 - -
Trre11g04489 746 SMART 26again6 517 544 IPR006564 GO:0008270
Trre11g04489 746 Pfam SWIM zinc finger 512 540 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04489 Trre-Chr11 57166089 57169106 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g04489 MULE 2.9e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04489 - - gmx:100805273 1283.09