Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04487 ATGGATTCACCAACACCACCCAATACTGAACAAAACCTTAACCTCAACAACCTCAAACCACTCAAAATCTTAGGCAAAGGAGCAATGGGAACCGTTTTCCTCATCCAACAAAACAACAACAACAATATGGCACTCAAAGTAGTTGATAAATCCTCCACTCACGACGCCGAACGTCGCGCCCGTTGGGAAATTCAAGTCTTATCAACTCTAGCTCATCCATTTCTCCCATCGCTTCTGGGCTCTTTCGAAACGGCCCAATTATTAGGTTGGGTTGTTCCGTATTGCCCAGGAGGGGATCTCAATGTGCTCCGTTACCACCAAACGGATCATGTGTTCTCAACAACAGTTATCCGTTTCTATATAGCAGAAATTCTCTGTGCTCTCGACCATCTTCATACCATGGGCATCGCTTATCGTGACCTTAAACCTGAAAACGTTCTTATTCAACAATCAGGCCACGTCACCTTAACTGATTTCGATCTCTCACGTAAACTCTCTCACAAAACCGTTAAAATTGAAACCGTCGTCGATAACAGAATCAATGAATCTCGCCGCAAAACTCGGCGGTGGCGGGTCCCACTCACGGAGGCTAATGGAAAGATAGCGCGAGTTATTCCGGTGAGTCGACGCGGGGTGAGTTTCTCCGACGGTGAACGGTCTAACTCGTTTGTCGGTACGGCGGAGTACGTCGCGCCGGAGGTTATACGCGGCGAAGGACATGAATTTGCGGTTGATTGGTGGGCGTTTGGAGTTTTGACTTATGAGATGTTGTATGGGAAAACGCCGTTTAAGGGGAAGAATAAGAAGGAAACGTTTCGAAACGTGCTTTTCAAGTCGCCGGAGTTTGTTGGAAGAAAAACGGCGTTAACGGATTTGATCGAACGGTTGTTAGAGAAGGATCCGTTGAAGCGATTGGGTTATGCTGGTGGTGCAAGTGAGATAAAAGAGCATCAGTTTTTTAGAGGGGTAAAATGGAAAATGTTAACGGAGGTTGTACGGCCGCCGTTTATTCCGTCAAAGGATGACAGTTATTTAACGGCGGATAAATTTGATGAGGGAATAGTTAATATAAGTGATTATTTTGAGAAGTTAAAATCTCCAGCGGTGTTGCCGTCTTCACCGTTACGGTCACCGTCTTCTGAGTTTCGGGATAGTGTTTCTTTTGATGAGTTCTGA 1176 0.4566 MDSPTPPNTEQNLNLNNLKPLKILGKGAMGTVFLIQQNNNNNMALKVVDKSSTHDAERRARWEIQVLSTLAHPFLPSLLGSFETAQLLGWVVPYCPGGDLNVLRYHQTDHVFSTTVIRFYIAEILCALDHLHTMGIAYRDLKPENVLIQQSGHVTLTDFDLSRKLSHKTVKIETVVDNRINESRRKTRRWRVPLTEANGKIARVIPVSRRGVSFSDGERSNSFVGTAEYVAPEVIRGEGHEFAVDWWAFGVLTYEMLYGKTPFKGKNKKETFRNVLFKSPEFVGRKTALTDLIERLLEKDPLKRLGYAGGASEIKEHQFFRGVKWKMLTEVVRPPFIPSKDDSYLTADKFDEGIVNISDYFEKLKSPAVLPSSPLRSPSSEFRDSVSFDEF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04487 391 FunFam Serine/threonine-protein kinase OXI1 99 167 - -
Trre11g04487 391 Gene3D Transferase(Phosphotransferase) domain 1 217 339 - -
Trre11g04487 391 MobiDBLite consensus disorder prediction 370 391 - -
Trre11g04487 391 ProSiteProfiles Protein kinase domain profile. 18 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04487 391 PANTHER FLIPPASE KINASE 1-RELATED 10 341 - -
Trre11g04487 391 ProSiteProfiles AGC-kinase C-terminal domain profile. 321 391 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre11g04487 391 SMART serkin_6 18 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04487 391 ProSitePatterns Protein kinases ATP-binding region signature. 24 46 IPR017441 GO:0005524
Trre11g04487 391 Gene3D Phosphorylase Kinase; domain 1 340 351 - -
Trre11g04487 391 FunFam Serine/threonine-protein kinase OXI1 218 339 - -
Trre11g04487 391 Pfam Protein kinase domain 216 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04487 391 Pfam Protein kinase domain 21 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04487 391 SUPERFAMILY Protein kinase-like (PK-like) 15 377 IPR011009 -
Trre11g04487 391 Gene3D Transferase(Phosphotransferase) domain 1 99 169 - -
Trre11g04487 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Trre11g04487 391 Gene3D Phosphorylase Kinase; domain 1 18 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04487 Trre-Chr11 57129545 57130720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04487 12 388 AGC Kinase Gene Family AT1G51170 57.323 1.01e-153 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre11g04487 Pkinase 5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04487 - K08286 gmx:100785281 495.738