Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04486 ATGAACACAAACAACTGGCTTTCATTTCCACTTTCTCCAACTCATCCTTCTTCATTACCACCTCATCTTCAACCAACTCAATCTCAATATCATCACTTTTCTCTTGGAACATTAGTCAATGACAACATGTTGGAAACCCCTTTCCAAAATCATGATTGGAACCTAATGAGTACTAGTCACAGTCAGAGCAGCAATGAAGTTCCAAAGGTTGCTGATTTTCTTGGTGTGAGCAACAAAATCAGTACTGAAAATGAGTCAGATCTTGCAGCCTTTGATCATTCTTCAGATAATAATTACCTATTCATGCCACCACTACATAATAACTCAGTTATAACAACTTCTAGCAACAGTTATGATCAATATCAAGAAAATGGTAACAATAATCTGCAATCATTGACATTATCAATGGGAAGTGGTACTACTACTACTACTAAGGATTCCATATGTGAAACCAGTGGTGACACTAACAGTACAGTTGAAGCAGCTGCTACACCTAAAAGAGCTTTGGATACCTTTGGCCAAAGAACATCTATATATCGAGGCGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGATAATACCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGGTGGATATGACAAAGAAGAGAAAGCAGCAAGGGCTTATGATTTAGCTGCACTGAAGTATTGGGGGACATCCACCACTACAAATTTTCCAATTAGTAACTATGAGAAGGAAGTTGAAGATATGAAGCACATGACTAGACAAGAATTTGTTGCCGCCATAAGAAGAAAGAGCAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGAATTGGCAGAGTAGCAGGAAACAAAGATCTTTACTTAGGAACTTTCAGTACTGAAGAAGAGGCTGCAGAAGCTTATGACATAGCTGCAATTAAGTTCAGAGGATTAAACGCTGTAACAAACTTCGACATGAATCGTTACGATGTGAAAGCGATACTTGAAAGTAATACTCTTCCAATAGGAGGTGGTGCTGCAAAACGGTTAAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAAAGAGAACAAGAGATGATAGCATTAGGCTCTAGTACTACTGTTCAATATGGAGGAATAGGAGAAGGATCTTCAAGTTCAAGTAGGATGCAATTACAAGGTTACCCTTTAATGCAATTTGAACCTTTATATGACAATAGTATTCAAGATACGTCGTCATTTAATCAGCAGAGTTATATTCAAACTCAGCTTCAGTTGCATCAACAACAGCAAAGTGGAGGATTTTATAATTATAATGGGAATTACAATATTCAGAATCAGCAGGGTTTGATGAATATGGGTATGATGGAGAATATTGGTGGTGGAGGAGGGTATATTGGGAATAATATTAATGTAGGTGGAAGTGGAGGGGAGGAAGTTGGGTTTGTTAAGGTTGATTATGACATGGGTTCCGGAGGTTATGGGGGTTGGTCGGCGGCGGATGCTTCAAATGCTGCTGCAGCTGGTGTTTTTTCAATATGGAATGATTGA 1581 0.3915 MNTNNWLSFPLSPTHPSSLPPHLQPTQSQYHHFSLGTLVNDNMLETPFQNHDWNLMSTSHSQSSNEVPKVADFLGVSNKISTENESDLAAFDHSSDNNYLFMPPLHNNSVITTSSNSYDQYQENGNNNLQSLTLSMGSGTTTTTKDSICETSGDTNSTVEAAATPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREQEMIALGSSTTVQYGGIGEGSSSSSRMQLQGYPLMQFEPLYDNSIQDTSSFNQQSYIQTQLQLHQQQQSGGFYNYNGNYNIQNQQGLMNMGMMENIGGGGGYIGNNINVGGSGGEEVGFVKVDYDMGSGGYGGWSAADASNAAAAGVFSIWND 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04486 526 FunFam AP2-like ethylene-responsive transcription factor ANT 177 243 - -
Trre11g04486 526 SMART rav1_2 178 247 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 SMART rav1_2 277 341 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 PRINTS Ethylene responsive element binding protein signature 317 337 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 CDD AP2 177 243 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 65 422 - -
Trre11g04486 526 SUPERFAMILY DNA-binding domain 276 336 IPR016177 GO:0003677
Trre11g04486 526 ProSiteProfiles AP2/ERF domain profile. 277 335 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 Gene3D AP2/ERF domain 277 337 IPR036955 GO:0003700|GO:0006355
Trre11g04486 526 Gene3D AP2/ERF domain 178 243 IPR036955 GO:0003700|GO:0006355
Trre11g04486 526 Pfam AP2 domain 278 327 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 Pfam AP2 domain 178 233 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 ProSiteProfiles AP2/ERF domain profile. 178 241 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 FunFam AP2-like ethylene-responsive transcription factor 276 337 - -
Trre11g04486 526 CDD AP2 276 335 IPR001471 GO:0003700|GO:0006355
Trre11g04486 526 MobiDBLite consensus disorder prediction 1 25 - -
Trre11g04486 526 SUPERFAMILY DNA-binding domain 177 243 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04486 Trre-Chr11 57072083 57075004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04486 1 526 AP2-EREBP Transcription Factor Family AT3G20840 58.586 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre11g04486 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04486 K09285 - gmx:100788471 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04486 11 57072083 57075004 Trre11g04486 11 57072083 57075004 ECH