Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04484 ATGGACCATGACCAGACTGGATGCGAAGCAGCCCCAGAAGGTCCTATATTGTGCATCAACAACTGTGGCTTTTTTGGAAGTGCAGCTACCAAGAACATGTGCTCTAAGTGCCACAAAGACATGATGCTGAAACAGGAGCAGGCCACTCTTGCAGCATCTTCCATTGAGAACATTATGAATGGGAAATCAAGCAGCAGTGGAATTGAACCTGCTATCGCTGCCAATGTGGAGATCTCAGTCGATTCAGTGGAGCCCAAAACCATCTCTGCCCAACCATTAGTTGCTTCCGGCTCAGAGGAGAGTGCGGAGAAGAAACCCAAGGATGGTCCTAAACGGTGTACCAACTGTAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGGTGTGGTAACCTTTTCTGTGCTGTGCATCGCTACTCAGACAAGCATGATTGTCCATTTGACTACCGCACTGCTGGAAAGGATGCAATAGCAAAAGCAAACCCGGTTGTCAAGGCTGAGAAGCTTGACAAGATCTAG 519 0.4778 MDHDQTGCEAAPEGPILCINNCGFFGSAATKNMCSKCHKDMMLKQEQATLAASSIENIMNGKSSSSGIEPAIAANVEISVDSVEPKTISAQPLVASGSEESAEKKPKDGPKRCTNCNKRVGLTGFNCRCGNLFCAVHRYSDKHDCPFDYRTAGKDAIAKANPVVKAEKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04484 172 Gene3D - 3 66 - -
Trre11g04484 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Trre11g04484 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Trre11g04484 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Trre11g04484 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Trre11g04484 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Trre11g04484 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Trre11g04484 172 FunFam Zinc finger AN1-type containing 6 86 168 - -
Trre11g04484 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Trre11g04484 172 MobiDBLite consensus disorder prediction 91 110 - -
Trre11g04484 172 Gene3D - 88 168 IPR035896 -
Trre11g04484 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Trre11g04484 172 SUPERFAMILY AN1-like Zinc finger 96 167 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04484 Trre-Chr11 57065600 57066118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04484 11 172 C2H2 Transcription Factor Family AT3G52800 41.765 7.71e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04484 - - gmx:100781607 308.916