Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04480 ATGAGTACTCATCCCTACTTCTCCAATAACTTCAATGGTTATAATAATTATTTTGACCTAAATAACCCTCCATTCTATAATTTTCCTTCTAGTTATCATCAAAACAACATATCTTTTACATCTTCACCTTCATCTCCACCTCCCAAAGAAGCACTTCCTTTACTTAACCTAAGCCCTACAAAACATGAAGATCTTCTTCTTCTTCAAGAATCTTCTTTTAGTTGTTCTTCTTCCATGGAAATAATGAATATGAAAGAGAAAGAACAACAACTAAGCATATCATCAAATTCTTTAGATGATGATGATGCTGTAACTGTGGCTTTGCATTTAGGGCTTCCAAGTATAAGCTCAGCTGATTTAGCTTCAAATATGTATGTTGATTCAGAGAAAGATGATGAAAAAGTAGTAACTGTTGCTTCTTCTGAGTGTCCACTGAATAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTGATTGGTCCAACACAGTTTTCATGTCCTCTTTGTTTCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGAAAAGGACCAGAATCACTAAGAGGAACACAACCAACAGCAATGCTAAGACTCCCATGTTATTGTTGTGCACCTGGATGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTAAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAACCATTTATGTGTAGAAAATGTTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACTCATGAGAAAAACTGTGGTAAACTTTGGTATTGTTGTTGTGGGTCCGATTTTAAGCACAAAAGATCACTAAAAGATCATATCAAGGCTTTTGGAAATGGACATAAAGCTTATGGAATTGATGAATGTCTTGATCAAGATGATGAACATGGTGGCTCTGAAATTGAGCAAGAAAATGAATCTTTTCAGTCATAG 999 0.3564 MSTHPYFSNNFNGYNNYFDLNNPPFYNFPSSYHQNNISFTSSPSSPPPKEALPLLNLSPTKHEDLLLLQESSFSCSSSMEIMNMKEKEQQLSISSNSLDDDDAVTVALHLGLPSISSADLASNMYVDSEKDDEKVVTVASSECPLNKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDECLDQDDEHGGSEIEQENESFQS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04480 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Trre11g04480 332 FunFam Zinc finger protein WIP2 221 303 - -
Trre11g04480 332 Gene3D Classic Zinc Finger 167 190 - -
Trre11g04480 332 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Trre11g04480 332 PANTHER ZINC FINGER PROTEIN WIP2 26 330 IPR043584 GO:0003700|GO:0010468
Trre11g04480 332 SUPERFAMILY beta-beta-alpha zinc fingers 234 272 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04480 Trre-Chr11 57007638 57010420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04480 49 332 C2H2 Transcription Factor Family AT3G57670 61.321 9.31e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04480 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04480 - - gmx:100789416 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04480 11 57007638 57010420 Trre11g04480 11 57007638 57010420 ECH
Trre13g03500 13 42649581 42652001 Trre11g04480 11 57007638 57010420 ECH
Trre1g02087 1 16626353 16629679 Trre11g04480 11 57007638 57010420 ECH