Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04478 ATGATGACTGATAGGAGACACCAATATCCAACAATAGCACAAAAGTTTGGTTCCCAATTTCATCTAAGATCCAACCTTTCTCCACATGTTGCAACTTCCTATGGAACTTTGGAACAGTTTTCATCCTCAAATGCATTGTTTGTTCCATCTCCATCAGAGAAAAACTTTGCAAGTTTTGCAACTGATTTTCTGATGGGTGGAGTTTCAGCAGCAGTGTCCAAATCTGCAGCCGCTCCTATAGAGCGCGTTAAGCTTCTGATTCAAAACCAAGATGAAATGATCAAGGCTGGTAGGCTTTCTGAACCTTACAAAGGTATTGGTGATTGTTTTGGCAGAACAATCAAAGATGAAGGATTTGCTTCGCTTTGGCGAGGAAATACTGTCAATGTTATCCGTTACTTCCCAACACAGGCATTCAACTTTGCATTCAAAGATTACTTTAAGAAGCTATTTAACTATAAGCAAGAGAGGGATGGATATTTGAAAGTGTTTGCAGGAAATATTGCATCTGGTGCTGCAGCAGGAGCTTCATCCTCCGTCTTTGTTTACTCATTGGATTACGCACGAACACGCCTTGCAAGTGACGCCAAGGCCACAAAGAAAGGCGGCGAGAGACAATTCAATGGCTTGATTGATGTCTACAGAAAGACATTCCAATCAGATGGTATTGCCGGTCTTTATCGTGGCTTCAATGTTTCGATTGTTGGAATCATTGTCTACCGTGGTTTGTATTTTGGATTGTATGATTCTCTTAAGCCAGTGCTCTTGGTAGGAACATTCCAGGATAGTTTCCTTGCAAGCTTTGTTCTAGGATGGGCTGTTACAGTTGGTGCCAGTGTTGCATCTTACCCTTTAGACACTGTTCGTAGAAGAATGATGATGACATCGGGTGAAGCCGTAAAGTACAAGAGTTCTTTGGATGCTTTCTCACAAATTGTGAAAACTGAAGGTCCAAAATCTCTCTTCAAAGGTGCTGGTGCAAACATTCTTCGAGCAGTTGCTGGTGCTGGTGTGCTTGCAAGTTATGATAAACTTCAGGTGCTTATGTTGGGAAAGAAATACGGCTCTGGTGGAGCTTAA 1080 0.4194 MMTDRRHQYPTIAQKFGSQFHLRSNLSPHVATSYGTLEQFSSSNALFVPSPSEKNFASFATDFLMGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFASLWRGNTVNVIRYFPTQAFNFAFKDYFKKLFNYKQERDGYLKVFAGNIASGAAAGASSSVFVYSLDYARTRLASDAKATKKGGERQFNGLIDVYRKTFQSDGIAGLYRGFNVSIVGIIVYRGLYFGLYDSLKPVLLVGTFQDSFLASFVLGWAVTVGASVASYPLDTVRRRMMMTSGEAVKYKSSLDAFSQIVKTEGPKSLFKGAGANILRAVAGAGVLASYDKLQVLMLGKKYGSGGA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04478 359 Gene3D Mitochondrial carrier domain 60 355 IPR023395 -
Trre11g04478 359 FunFam ADP,ATP carrier protein, mitochondrial 60 355 - -
Trre11g04478 359 Pfam Mitochondrial carrier protein 58 153 IPR018108 -
Trre11g04478 359 Pfam Mitochondrial carrier protein 262 350 IPR018108 -
Trre11g04478 359 Pfam Mitochondrial carrier protein 164 255 IPR018108 -
Trre11g04478 359 SUPERFAMILY Mitochondrial carrier 55 344 IPR023395 -
Trre11g04478 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 162 254 IPR018108 -
Trre11g04478 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 57 150 IPR018108 -
Trre11g04478 359 PRINTS Adenine nucleotide translocator signature 267 283 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre11g04478 359 PRINTS Adenine nucleotide translocator signature 59 71 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre11g04478 359 PRINTS Adenine nucleotide translocator signature 162 175 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre11g04478 359 PRINTS Adenine nucleotide translocator signature 103 124 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre11g04478 359 PRINTS Adenine nucleotide translocator signature 136 148 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre11g04478 359 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 54 358 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre11g04478 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 262 348 IPR018108 -
Trre11g04478 359 PRINTS Mitochondrial carrier protein signature 125 145 IPR002067 GO:0055085
Trre11g04478 359 PRINTS Mitochondrial carrier protein signature 75 89 IPR002067 GO:0055085
Trre11g04478 359 PRINTS Mitochondrial carrier protein signature 271 293 IPR002067 GO:0055085
Trre11g04478 359 PRINTS Mitochondrial carrier protein signature 227 245 IPR002067 GO:0055085
Trre11g04478 359 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Trre11g04478 359 PRINTS Mitochondrial carrier protein signature 62 75 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04478 Trre-Chr11 56987944 56989435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04478 41 359 Antiporters AT5G13490 79.375 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04478 K05863 - gmx:100800843 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04478 11 56987944 56989435 Trre11g04478 11 56987944 56989435 ECH