Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04476 ATGGCCTTGTTTCAAACTTACAGTCTTAGTAACGGACAACGGCCAAGAGCCCTAATCGACGCCTATGGCAGTGACAGAACTTGTGGCAGTACTTTGAATAAGGTTATTTCAACATCATGGCAGAACACTGAAGAGCAGGAGTTTGATTGGAAAGATATGAATCGTCCAACTATTTGTTTCTCCACAGAAAAGCCTGTTACTGTTGCACCAAGGATGATGTTTCCTTGTCTCACGCCTAATATTGAGTACCGTCCACCAGTCTTGCCGGCTCCTCGTCCTTGTCCATTGAAGAATCCTGTTAGGAATCCATCTGAATCAATAAATGTTGCTAATAGTACCATTGTGAGTCATGGTTTTCTAAATTTTGAGAACAATGATATCAGTAAAAGAAACCTGCTGCATCAGTTACCTAATCAGCCAGCAGGTCCGTCGCAATTTAGTTTTATGAAAGTAAACCCTGTCACATGCCCTGTGGTGCCACTTTTTCCTCCAGCCGGCGGCCTACATGCTCCGATCCAGATGATACATCATCCCAATTATACTAGTCCTTCTCTGTCAAGCCAACAACCATCTTTTGGATATTCTAATTTGATTAATTCACTCTTAGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTAAACAGGATTTTGTTGGCATCGGCATTGAGTTTGATCCGGATATTCTGAAGGTTCGTCATGAATCTGTAGTGAGTGCCTTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGCCAACGATTCAAATCCAAAGACGAGCATAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTGGTATGTCTAAAAACCGTAAGCAGAAACCCTCTCGCAAGTGGTTTGTCAATGAGACAATGTTGCTTGAGGCATTGGGGAATGAATCAGCTCCTGCTCTAGGTTTTTTGCTAGCTGAGGAAGAAAATAAAGAAGATGAAGAAGAGTTCGCAGTTCCTGCTGAAGAGAACCATAATACATGCGCACTATGTGGAGAATCTTTCGATCAGTTTTATAGCGATGAGACAGAGGAGTGGATGTTTAGAGGAGCCGTTTATCTTAACGCGCCCAATGGAAACATGGATAGGTCACAATTAGGCTCTATTGTTCATGCTAAATGCGGATCTGATACTCCACATGCATATGAAGGCAATCAAAGGAAACGTATGTCGTGCGAAGAAGGCAATCAAAGAAAACGAATGCGAAGTAGACTAGTTTTGTAA 1242 0.4267 MALFQTYSLSNGQRPRALIDAYGSDRTCGSTLNKVISTSWQNTEEQEFDWKDMNRPTICFSTEKPVTVAPRMMFPCLTPNIEYRPPVLPAPRPCPLKNPVRNPSESINVANSTIVSHGFLNFENNDISKRNLLHQLPNQPAGPSQFSFMKVNPVTCPVVPLFPPAGGLHAPIQMIHHPNYTSPSLSSQQPSFGYSNLINSLLAQGVISLANQAPKQDFVGIGIEFDPDILKVRHESVVSALYGDLPRQCTTCGQRFKSKDEHSSHMDWHVTKNRGMSKNRKQKPSRKWFVNETMLLEALGNESAPALGFLLAEEENKEDEEEFAVPAEENHNTCALCGESFDQFYSDETEEWMFRGAVYLNAPNGNMDRSQLGSIVHAKCGSDTPHAYEGNQRKRMSCEEGNQRKRMRSRLVL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04476 413 ProSitePatterns Zinc finger C2H2 type domain signature. 249 269 IPR013087 -
Trre11g04476 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 274 IPR013087 -
Trre11g04476 413 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 123 385 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04476 Trre-Chr11 56970235 56971962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04476 13 58 C2H2 Transcription Factor Family AT4G04885 53.571 2.65e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04476 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04476 K14400 - tpra:123894024 407.912