Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04473 ATGGCAACAACCTATCACCAACCTGCTTCAATAGAAGAAGTTCGAACTCTATGGATTGGCGATTTACAATACTGGGTAGACGAAAACTACCTCACTCACTGTTTCTCCCATACCGGCGAAGTTATCTCTATCAAAATCATTCGTAACAAAATCACCGGTCAACCAGAAGGTTACGGTTTCGTCGAATTCGTATCACACGCCGCCGCTGAAAGAGTTCTTCAAAGTTACAACGGAACTCAAATGCCAGGTACCGAACAAACTTTCCGATTAAATTGGGCTTCATTTGGTATCGGTGAACGCCGTCCTGATGCCGGTCCTGATCATTCCATTTTCGTCGGGGATCTTGCTCCTGATGTAACGGATTATCTTTTGCAAGAGACTTTTAGAACTCATTATAGTTCTGTTCGTGGTGCCAAAGTTGTTACGGATCCTAATACTGGTCGTAGTAAGGGTTATGGTTTTGTTAAATTTGCTGATGAGAGTGAACGGAATCGCGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGACCCATGAGGATTAGTGCTGCTACTCCCAAGAAGACTACTGCTTATCCGCAGAATCCTTATGCTGCTGTTGCTGTTGCTGCTGCTGCTGCTGTTGCTCCTGCACCTGCTGCTCCTAAAGCAATATATCCAGTGCCAGCGTACACCGCCCCAGTGAATACAGTTCCACCAGAATATGACGTAAACAATACTACCATTTTTGTTGGTAATTTGGATCTTAATGTCTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGAGAGATTGTTTCTGTCAAAGTACATGCCGGCAAAGCATGTGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAAAAGATGCAGGGAAAGATAATAGGTCAACAAGCGATTCGAGTTTCTTGGGGTAGGCCCCTAACAGCAAGACAGGACGTACCTGGTGCCTGGGGACAACAGGTGGATCAAAGTCAATGGAGTGCATACTATGGGTATGGACAGCCGGGTTATGAAGCTTATGCATATGGGGCTGCACAGGATCCTTCGATGTATGCATATGCTGGATATGCTGGCTATGCACAATACCCTCAACAGGTCGAAGGTGCGCAAGACGCATCAGCTATGTCTGTGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCTCTGGCAATGCCCGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAATGCCATTTTAGGGCGGTCCCTCTGGCACAAAAGTCATTCCTCATCCTTACAACAGCAAGCTTAG 1308 0.4557 MATTYHQPASIEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYSSVRGAKVVTDPNTGRSKGYGFVKFADESERNRAMSEMNGVYCSTRPMRISAATPKKTTAYPQNPYAAVAVAAAAAVAPAPAAPKAIYPVPAYTAPVNTVPPEYDVNNTTIFVGNLDLNVSEEELKQNFLQFGEIVSVKVHAGKACGFVQFGARASAEEAIQKMQGKIIGQQAIRVSWGRPLTARQDVPGAWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYAGYAQYPQQVEGAQDASAMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKSHSSSLQQQA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04473 435 CDD RRM2_SECp43_like 107 186 - -
Trre11g04473 435 Gene3D - 228 319 IPR012677 -
Trre11g04473 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Trre11g04473 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 307 IPR000504 GO:0003723
Trre11g04473 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Trre11g04473 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 241 313 IPR000504 GO:0003723
Trre11g04473 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 187 IPR000504 GO:0003723
Trre11g04473 435 Gene3D - 14 94 IPR012677 -
Trre11g04473 435 FunFam Polyadenylate-binding protein RBP47B 96 197 - -
Trre11g04473 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Trre11g04473 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 316 - -
Trre11g04473 435 FunFam Polyadenylate-binding protein RBP47B 14 94 - -
Trre11g04473 435 Gene3D - 97 196 IPR012677 -
Trre11g04473 435 FunFam polyadenylate-binding protein RBP45 224 320 - -
Trre11g04473 435 SUPERFAMILY RNA-binding domain, RBD 106 312 IPR035979 GO:0003676
Trre11g04473 435 CDD RRM1_SECp43_like 16 96 - -
Trre11g04473 435 SUPERFAMILY RNA-binding domain, RBD 6 83 IPR035979 GO:0003676
Trre11g04473 435 SMART rrm1_1 109 183 IPR000504 GO:0003723
Trre11g04473 435 SMART rrm1_1 242 309 IPR000504 GO:0003723
Trre11g04473 435 SMART rrm1_1 16 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04473 Trre-Chr11 56952251 56956820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04473 16 319 Eukaryotic Initiation Factors Gene Family AT1G22760 25.243 1.99e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04473 - - tpra:123894020 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04473 11 56952251 56956820 Trre11g04473 11 56952251 56956820 ECH