Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04472 ATGGAGTTGTTGTCATTGGAAACTAATTTGGAGAATGATTTAAATAACATGAGAAAGTATTATGAGAGTGGAAAAACAAAAGAAGCATCATGGAGAGAATCACAACTAAAAGGGTTGCGTAACTTTGTCAAAGAAAATGAGGAGAAAATCTTGAAGTCCCTCAAAATGGATTTAGGGAAGCATCATATTGAGGCTTTTAGAGATGAGGTTGGACTTTTAAAGAGATCCATAGATTTGGCAATAAAATCATTCAGAAAATGGATGGCTGGCAAAGAGGCTAAACTGCCACAAATAGCATTGCTTTCAAGTGCAGAAATTGTTGCTGAGCCTCTTGGTCTAGTTCTCATAATGTCATCATGGAATTTTCCCTTTGGAGTGTCCTTGGAGCCATTAATTGGAGCTGTAGCTGCTGGAAACATTGTAGTCCTAAAGCCCTCTGAGATGGCCCCTCTTTCATCTTCTCTTCTAGCCACAGTTCTACCAAATTACTTGGACATTAATGGCATTAAGGTCATTGAAGGTGGACCAGAGATGGGAGAGCAACTCCTACATAAAAAATGGGACAAAATTTTCTTCACAGGAAGTGCACGAGTGGGGAAGATTGTTATGACTGCAGCAGTGGAGCATCTTACTCCTGTAACTTTGGAGTTAGGTGGAAAATGTCCAGCACTGGTTGATTCACTTTCATCTTCTTTTGACATAAAGATGGCTGTGAAAAGAATATTGCTGGCAAAGTATGGGTCTTGTGCAGGACAAGCATGCATAGCAATTGATTATGTTCTTGTAGAAAAGAGTTTCAGTTCCACATTGGTGGAGTTATTGAAGGAATGGTTTAAGAAAATCTTTGGAGACAACCCAAAAGCATCCAACACCATTGGAAGAATTGTTAATAAAAAACATTGCAACAGAATCAAGAGTCTTCTCAATGAACATAAAGTCAAAGAATCAGTGGTTTTTGGTGGTTCTATGGACGAGGATGACTTATTTATGGAACCAACAATATTACTGGATCCACCACTTGAATCAGCAGCAATCATGACAGAAGAAATCTTTGGGCCCCTACTTCCCATAATCACGGTGGAAAAGATTGAAGATGGTATTAAGTTCATAAAATCAAAGCCTAAACCTCTAGCAATTTATGCCTTCACAAAAAACAAAACACTGCAGAGAAGAATAGTATCAGAAACATCATCTGGGAGTATTGTATTTAATGATGCAATTCTACAGTATGTAGCGGATACCATCCCATTTGGAGGAATTGGTGAAAGTGGATTTGGCAAGTATCATGGTAAATTCTCCTTTGACGCATTCAGTCACCATAAGGCTGTGGCTAGAAGAAGTTACTACACTGATTTTTGGTTCAGGTTTCCTCCATGGAATCTTAACAAGTTCCAACTACTTGAAGAAGCTTATAATTTAAACTATATTGGAATAGTTCTTGCCATACTCGGCTTAAAGAAATCAAAACGCTCATTATATCTTGCTTGTAATTGA 1494 0.3809 MELLSLETNLENDLNNMRKYYESGKTKEASWRESQLKGLRNFVKENEEKILKSLKMDLGKHHIEAFRDEVGLLKRSIDLAIKSFRKWMAGKEAKLPQIALLSSAEIVAEPLGLVLIMSSWNFPFGVSLEPLIGAVAAGNIVVLKPSEMAPLSSSLLATVLPNYLDINGIKVIEGGPEMGEQLLHKKWDKIFFTGSARVGKIVMTAAVEHLTPVTLELGGKCPALVDSLSSSFDIKMAVKRILLAKYGSCAGQACIAIDYVLVEKSFSSTLVELLKEWFKKIFGDNPKASNTIGRIVNKKHCNRIKSLLNEHKVKESVVFGGSMDEDDLFMEPTILLDPPLESAAIMTEEIFGPLLPIITVEKIEDGIKFIKSKPKPLAIYAFTKNKTLQRRIVSETSSGSIVFNDAILQYVADTIPFGGIGESGFGKYHGKFSFDAFSHHKAVARRSYYTDFWFRFPPWNLNKFQLLEEAYNLNYIGIVLAILGLKKSKRSLYLACN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04472 497 PIRSF ALDH 3 482 IPR012394 GO:0006081
Trre11g04472 497 SUPERFAMILY ALDH-like 15 460 IPR016161 GO:0016491
Trre11g04472 497 PANTHER ALDEHYDE DEHYDROGENASE 8 483 IPR012394 GO:0006081
Trre11g04472 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 219 423 IPR016163 GO:0016620
Trre11g04472 497 Pfam Aldehyde dehydrogenase family 17 443 IPR015590 GO:0016491
Trre11g04472 497 FunFam Aldehyde dehydrogenase 18 222 - -
Trre11g04472 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 18 441 IPR016162 GO:0016491
Trre11g04472 497 FunFam Aldehyde dehydrogenase 219 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04472 Trre-Chr11 56942816 56948697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04472 5 487 Aldehyde Dehydrogenase Gene Family AT4G36250 53.209 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04472 K00128 - gmx:100798020 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04472 11 56942816 56948697 Trre11g04472 11 56942816 56948697 ECH
Trre11g04472 11 56942816 56948697 Trre7g03151 7 29439491 29445677 PCT