Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04469 ATGGCTGAGAAAGAGAGTTTGTTTTCAGCAGGTGATTGGTTGAGAATACCAATTTGTACTTTCTTCAAAGATGCTAGATTAGTATTTAAATTAGACAGTCTTGGTCGCGAAATATTGTCAATTGCATTGCCTGCTGCTATGGCTTTGACAGCTGATCCTATTGCTTCACTGGTTGACACTGCATTCATTGGCCAAATAGGTCCAGTGGAGCTTGCTGCTGTAGGAGTTTCCATAGCTCTCTTCAATCAAGCATCAAGAATCGCAATTTTCCCACTCGTCAGTATCACAACTTCTTTTGTGGCTGAGGAAGATACCCTCAGCGGAGCAAGCTCGCAGGTAGAGGAGAATGGATGCTTGGAAGCTGCGACACCTCCGGATGCTGAAACTGAAACCAAAGAGTTTTTACCGCAGAAAAATTTGGCTGCTGAAAGCTTTCATATAGTTAAGGATGTTGAACAAAAGAGAAGGCATATTCCTTCAGCTTCGTCGGCGTTATTTTTTGGAGGTATTCTTGGCCTCATCCAAGCAATATTACTTATTTCTGCAGCAAAACCTTTATTGAACTTCATGGGAGTAACTTCTGATTCTCCTATGTTACATCCTGCACAGCAATACCTGAAATTGAGGTCTCTTGGTGCTCCTGCAGTTCTTCTTTCGTTAGCCATGCAGGGAGTTTTTCGAGGATTTAAAGACACCACAACTCCTTTATATGCTACTGTCGCAGGAGATGCGACCAACATAGCACTAGATCCTCTATTCATCTTTGTTTTCCACATGGGTGTCAACGGTGCAGCCATTGCTCATGTTATATCTCAGTATTTAATTTCAGCTATACTTTTGTGGAGTTTGATGAAACAAGTTGATCTTATACCTCCAAGCATCAAGCATCTTCAATTTGACCGATTTCTCAAAAATGGTTTTCTGTTATTAATGAGAGTCATTGCTGTAACTTTCTGCGTGACACTGGCTGCATCATTAGCTGCGCGTCACGGATCAACATCCATGGCTGCATTTCAAGTCTGTCTTCAGGTTTGGTTGGCAGTGTCTCTTCTTGCCGATGGTCTGGCTGTTGCCGGTCAGGCGATTCTTGCAGGTGCATTTGCTAACAAGGACTATGAAAAGGCCACAGCGACTGCATCCCGAGTATTGCAGATGGGTGTGGTTCTAGGAATGGGACTTGCATTCATTCTTGGAACAGGATTACACTTTGGAGCTAAACTATTTACAAAAGATGTCGATGTTATCCACCTCATTAGAGTTGGGATCCCGTTTGTTGCACTCACTCAACCCCTAAACTGTTTGGCATTTGTATTTGATGGTGTCAACTTTGGAGCATCTGATTTTGCATATTCAGCTTTCTCCATGGTTATAGTGGCAATTATTAGCATAATTTGTCTACTTATTTTATCATCTGCTGGTGGATTCATTGGAATTTGGGTTGCTTTGACCATTTATATGAGTCTAAGAGCATTTGCTGGCTTCTTGAGGATTGGAACTGGATCAGGACCATGGGAATTCCTTAGAAGCTAA 1530 0.4222 MAEKESLFSAGDWLRIPICTFFKDARLVFKLDSLGREILSIALPAAMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQASRIAIFPLVSITTSFVAEEDTLSGASSQVEENGCLEAATPPDAETETKEFLPQKNLAAESFHIVKDVEQKRRHIPSASSALFFGGILGLIQAILLISAAKPLLNFMGVTSDSPMLHPAQQYLKLRSLGAPAVLLSLAMQGVFRGFKDTTTPLYATVAGDATNIALDPLFIFVFHMGVNGAAIAHVISQYLISAILLWSLMKQVDLIPPSIKHLQFDRFLKNGFLLLMRVIAVTFCVTLAASLAARHGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDYEKATATASRVLQMGVVLGMGLAFILGTGLHFGAKLFTKDVDVIHLIRVGIPFVALTQPLNCLAFVFDGVNFGASDFAYSAFSMVIVAIISIICLLILSSAGGFIGIWVALTIYMSLRAFAGFLRIGTGSGPWEFLRS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04469 509 CDD MATE_DinF_like 34 499 IPR044644 -
Trre11g04469 509 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 14 509 IPR044644 -
Trre11g04469 509 NCBIfam MATE family efflux transporter 44 479 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Trre11g04469 509 Pfam MatE 311 464 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Trre11g04469 509 Pfam MatE 160 252 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04469 Trre-Chr11 56905087 56908236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04469 K26938 - gmx:100780165 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04469 11 56905087 56908236 Trre15g01406 15 10952297 10964677 ECH
Trre11g04469 11 56905087 56908236 Trre11g04469 11 56905087 56908236 ECH