Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04467 ATGGGAGCTCATTGTTCTAAATTCTGCTTGCCCTCCAATACAAAATCCAATCTTCATGACTTGCTTGATCATGATGATGGGAACAAGGGTGAAGAGAAGGATTCTTGGGGAGGTTTAACTGAGTTCAGTTTGGACCAACTAAGAACTGCCACGTCAGGATTTTCACCAGACAACATTGTATCAGAACATGGTGAGAAAGCTCCTAATATTGTCTACAAAGGAACAATTGGAGATCACATGTTGGTTGCTGTGAAACGTTTCAACAAGTCTGATTGGCCTGATTCACACCAATTCCTAGAGGAAGCACGAGAAGCGGGGAATCTAAGAAATGAGAGATTAACTAACTTGGTTGGTTATTGCTGTGAAGGGGAAGAGAGATTGCTAGTTGCAGAGTTTATGCCTAATGAAACTCTCTCTAAACATCTATTTCACTGGGAGACTCGGCCTATGAAATGGGAAATGAGGTTGAGAGTGGCCTTGTATTTAGCACAAGCTTTGGAATACTGCAGCAATAGAGGAAAGGCATTGTACCATGATCTTAATGCTGACAGAATTTTGTTTGATCAAGATGGCAACCCTAGATTGTCTTGTTTTGGACTAATGAAAAACAGCAGAGATGGTAGAAGTTACAGCACAAATTTAGCTTTCGCCCCTCCAGAATATTCGAGGACAGGAAAAGTTACTCCTGAAAGTGTAATTTACAGTTTTGGAACACTTTTGCTTGATCTTCTGAGTGGAAAGCATATCCCACCCAGCCATGCACTTGACCTTATTCGTGCCAAAAAAATTCAGCTGTTAACGGACTCGTGTTTGGAAGGTCATTTTTCAAATGATGGTGGAACTGAGTTATTGCGATTAGCTTCACGTTGTTTGCAGTACGAACCTCGCGAGAGACCAAATGCCAAGTCACTTGTGAATGCTCTAACTCCTCTTGAGAAAGAAACTTCAGTTTCATCACTTGTTTTATTGACCATACTGGATGAGAGTGAACCACCAAAGGAAAAAGTTCTATTGACACCATTTGGTGAAGCTTGCTCTAGAAAAGATCTCATTACAATACACAAAATTTTGGAGAGAGTGGGGTACAAGGATGATGAAGATGTTGCAAATGAGCTTTCTTTCCAAATGTGGACAGATCAATTACAAGGAACACTAAATTCAAAGAAACATGGAGATTCTGCTTTTCATGCTGGAGAATTCTCCAAGGCCATTGACTTTTATACACAATTCATCAATGGTGGGACTATGGTATCACCAACTGTGCATGCAAGGAGGTGCTTGTGTTACTTGATGAACAACATGACACAAGAAGCACTAGGAGACGCCGTGCAAGCTCAATTAATATCGCCCACCTGGCCGACCGCATTCTATCTTCAAGCAGTGACCTTCTTCACCCTTGGAATGAACATTGATGCACATGAAAGCCTTAAAGAAGCCACAACATTGGAAACCATAGCATAG 1461 0.4127 MGAHCSKFCLPSNTKSNLHDLLDHDDGNKGEEKDSWGGLTEFSLDQLRTATSGFSPDNIVSEHGEKAPNIVYKGTIGDHMLVAVKRFNKSDWPDSHQFLEEAREAGNLRNERLTNLVGYCCEGEERLLVAEFMPNETLSKHLFHWETRPMKWEMRLRVALYLAQALEYCSNRGKALYHDLNADRILFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFAPPEYSRTGKVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRAKKIQLLTDSCLEGHFSNDGGTELLRLASRCLQYEPRERPNAKSLVNALTPLEKETSVSSLVLLTILDESEPPKEKVLLTPFGEACSRKDLITIHKILERVGYKDDEDVANELSFQMWTDQLQGTLNSKKHGDSAFHAGEFSKAIDFYTQFINGGTMVSPTVHARRCLCYLMNNMTQEALGDAVQAQLISPTWPTAFYLQAVTFFTLGMNIDAHESLKEATTLETIA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04467 486 FunFam probable serine/threonine-protein kinase At5g41260 134 325 - -
Trre11g04467 486 SUPERFAMILY TPR-like 388 482 IPR011990 GO:0005515
Trre11g04467 486 Gene3D Transferase(Phosphotransferase) domain 1 134 325 - -
Trre11g04467 486 FunFam probable serine/threonine-protein kinase At4g35230 382 485 - -
Trre11g04467 486 ProSiteProfiles Protein kinase domain profile. 57 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04467 486 FunFam probable serine/threonine-protein kinase At4g35230 29 132 - -
Trre11g04467 486 Gene3D Phosphorylase Kinase; domain 1 28 132 - -
Trre11g04467 486 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 26 484 IPR045845 GO:0004672|GO:0009742
Trre11g04467 486 Gene3D Tetratricopeptide repeat domain 373 483 IPR011990 GO:0005515
Trre11g04467 486 SUPERFAMILY Protein kinase-like (PK-like) 35 312 IPR011009 -
Trre11g04467 486 Pfam Protein tyrosine and serine/threonine kinase 71 308 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04467 Trre-Chr11 56888927 56891844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04467 11 308 Glycoside Hydrolase AT3G07070 31.889 1.59e-39 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Trre11g04467 PK_Tyr_Ser-Thr 4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04467 - - gmx:100804210 757.288