Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04455 ATGCATGGATTAACAAATCTTTCTCTTCTTCCTAACATGTTACTTTCTCTTCATCATTCTCATCGATTTCTTCAACCATCTTCATGTTTTCAAAACCAAAACCAAACAATTTGTTCAATTTCAACACCCAGTTGCAAAATCAGTCATAAAGCTTCCATACATCAGAAGAACAAAGGAAGAGGTAGCAATAGAATAACGTTTGTTGTGAGAGCAAGGCGTGGTGAATCTCCATATGAAGTTCTTGGTTTGTCTCCTTCTGCATCTGTGAATGAAATCAAGAAAGCTTATCGAAAACTTGCTCTTAAGTATCATCCTGATGTTAATAAAGAGGATAATGCTCAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGTTAAATTCTAGTTCTCGGAAAAAATATGATTCTGGAACTCGTGGTTATAATTCATCTCAAAGAAGCCAAAGTCGGAATCCACAAGCTGAAGAAGAATTTTATGGATTAGGAGATTTCTTTAAGGATCTTCAAGAAGAATTCAGGAATTGGGAAGCCAATGCAGCTTCACAAGGAAAGCCGAAGAGCCTATGGGAGGAATTGTCGGAAATAGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTCAATATTGTTGATCAAAATGACAATCCTCAGGGAGGGAATCAATCTAATTTATACGAGACAGAGACACCAAGAAACAATACTCAAGGCGAAACTAGCAAGGGAAACACAAGCGTTGAGGATAACCTTGATGAAATAGAAGCCACTCTAGCACAGTTAAAAAAGGAGCTAGGCTTATAG 804 0.3682 MHGLTNLSLLPNMLLSLHHSHRFLQPSSCFQNQNQTICSISTPSCKISHKASIHQKNKGRGSNRITFVVRARRGESPYEVLGLSPSASVNEIKKAYRKLALKYHPDVNKEDNAQEKFMRIKHAYNTLLNSSSRKKYDSGTRGYNSSQRSQSRNPQAEEEFYGLGDFFKDLQEEFRNWEANAASQGKPKSLWEELSEIGEEFVEFLEKELNIVDQNDNPQGGNQSNLYETETPRNNTQGETSKGNTSVEDNLDEIEATLAQLKKELGL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04455 267 SMART dnaj_3 75 132 IPR001623 -
Trre11g04455 267 ProSiteProfiles dnaJ domain profile. 76 140 IPR001623 -
Trre11g04455 267 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Trre11g04455 267 MobiDBLite consensus disorder prediction 131 156 - -
Trre11g04455 267 MobiDBLite consensus disorder prediction 212 250 - -
Trre11g04455 267 PRINTS DnaJ domain signature 96 111 IPR001623 -
Trre11g04455 267 PRINTS DnaJ domain signature 78 96 IPR001623 -
Trre11g04455 267 PRINTS DnaJ domain signature 112 132 IPR001623 -
Trre11g04455 267 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 36 206 - -
Trre11g04455 267 CDD DnaJ 77 129 IPR001623 -
Trre11g04455 267 Coils Coil 244 264 - -
Trre11g04455 267 FunFam Chaperone DnaJ-domain superfamily protein 73 183 - -
Trre11g04455 267 Gene3D DnaJ domain 74 183 IPR036869 -
Trre11g04455 267 SUPERFAMILY Chaperone J-domain 32 136 IPR036869 -
Trre11g04455 267 Pfam DnaJ domain 77 137 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04455 Trre-Chr11 56815976 56818751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04455 78 138 C2H2 Transcription Factor Family AT1G74250 41.791 1.10e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04455 - - ccaj:109805427 335.88