Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04454 ATGCATGGATTAACAAATCTTTCTCTTCTTCCTAACATGTTACTTTCTCTTCATCATTCTCATCGATTTCTTCAACCATCTTCATGTTTTCAAAACCAAAACCAAACAATTTGTTCAATTTCAACACCCAGTTGCAAAATCAGTCATAAAGCTTCCATACATCAGAAGAACAAAGGAAGAGGTAGCAATAGAATAACGTTTGTTGTGAGAGCAAGGCGTGGTGAATCTCCATATGAAGTTCTTGGTTTGTCTCCTTCTGCATCTGTGAATGAAATCAAGAAAGCTTATCGAAAACTTGCTCTTAAGTATCATCCTGATGTTAATAAAGAGGATAATGCTCAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGTTAAATTCTAGTTCTCGGAAAAAATATGATTCTGGAACTCGTGGTTATAATTCATCTCAAAGAAGCCAAAGTCGGAATCCACAAGCTGAAGAAGAATTTTATGGATTAGGTAATTTTTTGAGAGATGCTCAAATAACAATAGGAGATTTCTTTAAGGATCTTCAAGAAGAATTCAGGAATTGGGAAGCCAATGCAGCTTCACAAGGAAAGCCGAAGAGCCTATGGGAGGAATTGTCGGAAATAGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTCAATATTGTTGATCAAAATGACAATCCTCAGGGAGGGAATCAATCTAATTTATACGAGACAGAGACACCAAGAAACAATACTCAAGGCGAAACTAGCAAGGGAAACACAAGCGTTGAGGATAACCTTGATGAAATAGAAGCCACTCTAGCACAGTTAAAAAAGGAGCTAGGCTTATAG 837 0.3644 MHGLTNLSLLPNMLLSLHHSHRFLQPSSCFQNQNQTICSISTPSCKISHKASIHQKNKGRGSNRITFVVRARRGESPYEVLGLSPSASVNEIKKAYRKLALKYHPDVNKEDNAQEKFMRIKHAYNTLLNSSSRKKYDSGTRGYNSSQRSQSRNPQAEEEFYGLGNFLRDAQITIGDFFKDLQEEFRNWEANAASQGKPKSLWEELSEIGEEFVEFLEKELNIVDQNDNPQGGNQSNLYETETPRNNTQGETSKGNTSVEDNLDEIEATLAQLKKELGL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04454 278 MobiDBLite consensus disorder prediction 223 261 - -
Trre11g04454 278 CDD DnaJ 77 129 IPR001623 -
Trre11g04454 278 SMART dnaj_3 75 132 IPR001623 -
Trre11g04454 278 Coils Coil 255 275 - -
Trre11g04454 278 ProSiteProfiles dnaJ domain profile. 76 140 IPR001623 -
Trre11g04454 278 SUPERFAMILY Chaperone J-domain 32 136 IPR036869 -
Trre11g04454 278 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Trre11g04454 278 Gene3D DnaJ domain 74 195 IPR036869 -
Trre11g04454 278 MobiDBLite consensus disorder prediction 131 156 - -
Trre11g04454 278 Pfam DnaJ domain 77 137 IPR001623 -
Trre11g04454 278 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 36 219 - -
Trre11g04454 278 PRINTS DnaJ domain signature 78 96 IPR001623 -
Trre11g04454 278 PRINTS DnaJ domain signature 96 111 IPR001623 -
Trre11g04454 278 PRINTS DnaJ domain signature 112 132 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04454 Trre-Chr11 56815976 56818751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04454 78 138 C2H2 Transcription Factor Family AT1G74250 41.791 1.18e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04454 - - ccaj:109805427 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04454 11 56815976 56818751 Trre11g04454 11 56815976 56818751 ECH