Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04453 ATGCATGGATTAACAAATCTTTCTCTTCTTCCTAACATGTTACTTTCTCTTCATCATTCTCATCGATTTCTTCAACCATCTTCATGTTTTCAAAACCAAAACCAAACAATTTGTTCAATTTCAACACCCAGTTGCAAAATCAGTCATAAAGCTTCCATACATCAGAAGAACAAAGGAAGAGGTAGCAATAGAATAACGTTTGTTGTGAGAGCAAGGCGTGGTGAATCTCCATATGAAGTTCTTGGTTTGTCTCCTTCTGCATCTGTGAATGAAATCAAGAAAGCTTATCGAAAACTTGCTCTTAAGTATCATCCTGATGTTAATAAAGAGGATAATGCTCAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGTTAAATTCTAGTTCTCGGAAAAAATATGATTCTGGAACTCGTGGTTATAATTCATCTCAAAGAAGCCAAAGTCGGAATCCACAAGCTGAAGAAGAATTTTATGGATTAGGTAATTTTTTGAGAGATGCTCAAATAACAATAGGTAGTTATATACTCTCTGGAGATTTCTTTAAGGATCTTCAAGAAGAATTCAGGAATTGGGAAGCCAATGCAGCTTCACAAGGAAAGCCGAAGAGCCTATGGGAGGAATTGTCGGAAATAGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTCAATATTGTTGATCAAAATGACAATCCTCAGGGAGGGAATCAATCTAATTTATACGAGACAGAGACACCAAGAAACAATACTCAAGGCGAAACTAGCAAGGGAAACACAAGCGTTGAGGATAACCTTGATGAAATAGAAGCCACTCTAGCACAGTTAAAAAAGGAGCTAGGCTTATAG 855 0.3637 MHGLTNLSLLPNMLLSLHHSHRFLQPSSCFQNQNQTICSISTPSCKISHKASIHQKNKGRGSNRITFVVRARRGESPYEVLGLSPSASVNEIKKAYRKLALKYHPDVNKEDNAQEKFMRIKHAYNTLLNSSSRKKYDSGTRGYNSSQRSQSRNPQAEEEFYGLGNFLRDAQITIGSYILSGDFFKDLQEEFRNWEANAASQGKPKSLWEELSEIGEEFVEFLEKELNIVDQNDNPQGGNQSNLYETETPRNNTQGETSKGNTSVEDNLDEIEATLAQLKKELGL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04453 284 Coils Coil 261 284 - -
Trre11g04453 284 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 36 225 - -
Trre11g04453 284 MobiDBLite consensus disorder prediction 229 267 - -
Trre11g04453 284 CDD DnaJ 77 129 IPR001623 -
Trre11g04453 284 SMART dnaj_3 75 132 IPR001623 -
Trre11g04453 284 ProSiteProfiles dnaJ domain profile. 76 140 IPR001623 -
Trre11g04453 284 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Trre11g04453 284 MobiDBLite consensus disorder prediction 131 156 - -
Trre11g04453 284 Gene3D DnaJ domain 74 204 IPR036869 -
Trre11g04453 284 SUPERFAMILY Chaperone J-domain 33 136 IPR036869 -
Trre11g04453 284 PRINTS DnaJ domain signature 112 132 IPR001623 -
Trre11g04453 284 PRINTS DnaJ domain signature 96 111 IPR001623 -
Trre11g04453 284 PRINTS DnaJ domain signature 78 96 IPR001623 -
Trre11g04453 284 Pfam DnaJ domain 77 137 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04453 Trre-Chr11 56815976 56818751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04453 78 138 C2H2 Transcription Factor Family AT1G74250 41.791 1.24e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04453 - - gmx:100812972 368.237