Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04446 ATGAACTCGGACACGTTACCCTCCTCCACGGCGTCGTTTTGGTGCTATAGTTGCACCCGTTTCGTTCATCTCTTAGATCATAACGACGTCGTTTGTCCACACTGTCAAAACGGTTTCGTAGAAGAGATTCACGCTGGTAATTCTCCGGCGGTTTCACTTTTTGCCGACGGAATTCAAGCTTCAAGGAGACAAAATTCCCGCCGGAGACGTCGTAACGCTGGTGGAAGCCGCTCACCTTTTAATCCGGTAATCGTTCTCCGCGGACCTAGAGAAGATGGTGCCGGTGGTGGCGCCGGCGGAGTTGAAAACGAGGGGAGTAGCTTTGAATTATACTATGAAGACAGCAACGGTAACGGTAACGGCACCGATCTACGACCTCTCCCACCGAATATGTCAGAGTTATTACTCGGTTCCGGCTTCGATCGGTTGTTAGAGCAATTCTCTCAGATCGAAATCAACGGTTTCGGTAGAGCAGAGAATCCACCGGCGTCAAAGGCGGCGATAGAATCAATACCAACGGTTGAGATCGCCGAAGCAGAAATAGAATCCGAAACGCACTGTGCGGTTTGCACCGAAGCTTTCCACCTTGGTTCGGAAGCGCGTAAGATGCCTTGTAAGCATCTTTATCATTCCGATTGCATTCTCCCATGGCTTTCGATGCGAAATTCGTGTCCGGTATGCCGTCACGAGCTACCGTCCGATCAAAATCCTCCGGAGAGTTTAATAGCCGGTCAGATCAACGAAGAATCAGTTGGATTGACGATATGGAGGTTACCTGGAGGTGGATTTGCGGTTGGGAGATTCGCCGGTGGTCGGAGAGCCGGCGAGATTCAGTTACCGGTTGTTTACACGGAGATGGATGGCGGTAATACTAATGAATCAAACGAAGATTCTAGAAGATTCTCTATTGCAGTTGGAAGCAATAGAGTTAGAGAAAGACGTGGAATTCGAAGAATTTTTCGAAATTTCTTTTCCTTTTTTGGTAACGTTAATTTAAACCGTAGCTTATCTACTTCATTGTTTAGTAGAAGCTCACGTAGTAGAAGAAGCAGAACTACTTGGGTCGAAGAAAGAAGAATGATTTAG 1086 0.4742 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCQNGFVEEIHAGNSPAVSLFADGIQASRRQNSRRRRRNAGGSRSPFNPVIVLRGPREDGAGGGAGGVENEGSSFELYYEDSNGNGNGTDLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVEIAEAEIESETHCAVCTEAFHLGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNPPESLIAGQINEESVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPVVYTEMDGGNTNESNEDSRRFSIAVGSNRVRERRGIRRIFRNFFSFFGNVNLNRSLSTSLFSRSSRSRRSRTTWVEERRMI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04446 361 SMART ring_2 187 227 IPR001841 -
Trre11g04446 361 Pfam Protein of unknown function (DUF1117) 251 350 IPR010543 -
Trre11g04446 361 SUPERFAMILY RING/U-box 167 234 - -
Trre11g04446 361 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Trre11g04446 361 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Trre11g04446 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Trre11g04446 361 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Trre11g04446 361 Pfam Ring finger domain 186 228 IPR001841 -
Trre11g04446 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 58 232 - -
Trre11g04446 361 MobiDBLite consensus disorder prediction 57 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04446 Trre-Chr11 56761096 56762181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04446 123 239 C3H Transcription Factor Family AT5G01980 44.444 3.41e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04446 K11982 - gmx:100804867 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04446 11 56761096 56762181 Trre7g03235 7 30573601 30574686 PCT