Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04442 ATGCTTTCTCCGAACGCCTTTCTGCAAGATTTCTGTGTTCCTGACACAGTGAACCTGGAAACAAATGGATTTGAGGTGGAAGATTCATCATTATCACCTTCTGTCACAAGCTCAAATGGAGAATATCAATATGAACACACAAGATATTCCAATAACATCCTCAGATACATAAGTGATATCCTCATGGATGAAGAAGATGACTTGGAGCTTAAACCTTGCATGTTGCAGGAATGTTTAAGACTCCAAGCTGCTGAAAAGTCATTCTATGATGTTCTTGGTCACAACTATCCTAATTCATCATGTAAAGATACCACCGACACAGATGGAAGTTTCAGTCGCGGCACTGCTAGTTTTGAGAGCAACAGCAGCAGCTGCTCCATTGATAACTCATATGAGTCAGATTGGGTCAACCATGTTGGTGAATTCGATTGTTCTTCCTTACAACTAAAAACCCCTGTTGTAGAAAAAAACTACCATTATGTGATAGAAGCTGCTAACGATATTCACAATGGAAGTTGGAATGCCATTCAGCCAGGGATTGTGCAAGAGTTTTCAGCTTCAGCAGTACCAAGAGAAAAGAGAAGTCATAAGATGAATGTTGATGTTACTTGTAATGAACAAGAGGGAAGAGGTAGCAAGCTTTCAGCTATCTTCTCTGATGAATTAGAGCCACCACAGATCTTAGATGAGGTACTGCTTTATCAGAGAGGGAAGGCAAAGGGAACGGATTCACATTCGAAGAAAGTATCTACTACTAACAATGCCCCAGCTGTGGATTTCTGGACTATGCTAACTCAATGTGCGCAGGCCGTGGCGAGCTACAATCAAAGGAATACAAATGAGCTACTCAAGCAGATTAGGCAACATTCTTCACCTTTCGGCGATGGACTCCAGCGCTTAGCTCATTACTTTGCCAATGGTCTTGAGATAAGATTGGCTGCCGAGACACCATCGTATAAGCCACTTGATCTGGCTACTGCTGGAGATATGTTGAAAGCTTACAAACTATTTGTTACCTCATCTCCTTTGCAGAGAATGACGAATGTGTTCTTAACCAATACGATTTTCAGACTAGTGAAGAATGAGAGCAGCGTTCACATTATCGATTTTGGAATTTGCTATGGTTTTCAATGGCCTTGCCTTATCAAAAAACTTTCATCAAGACCTGGTGGTCCTCCAAAGCTTCGAATTACGGGAATTGATCTCCCTCGGGCCGGATTTAGGCCTGCAGAGAGGGTCGAGGAAACCGGACGGCGTTTAGAAAACTACTGCAAGAAGTTCAATGTACCATTTGAATACAACTGCATTGCACAGAAATGGGAAACTGTCCGGCTCGAGGATCTAAAGATGGACAGGAATGAAATAACAGTTGTTAGTTGTTTATACAGACTGAAGAACATGCCTGATGAAACTGTAGCAGCGAATTGTCCAAGAGAAGCTTTGTTGAAGCTGATCAGGATGATTAATCCAAGAATCTTCTTCCATGGTGTTGTCAATGGAAGTTATAGTGCACCGTTTTTTCTGACTCGGTTTAGGGAAGCACTATACCACTTCTCATCATTGTTTGATATGTTTGAGGCTAATGTGCCTCGTGAAGACACGCAGAGGTTAATGCTTGAGAGAGAGTTGTTTGGAAGGGATGCCATAAATGTTATATCTTGTGAGGGTGCAGAGAGAGTTGAAAGGCCTGAGACCTACAAGCAGTGGCAGCTCAGGAACATGAGAGTCGGATTCAAACAAATCAGGTTGGATTCTGACTTGGTGAATGTAACCAAAGCAATGGTGAAAAGGGAACACCATAAAGATTTTGCAGTTGATGAAGATGGTAAGTGGGTTTTGCATGGATGGAAGGGACGTGTTTTGAATGCTTTCTCTGCTTGGGTTCCTGCTTAA 1893 0.4221 MLSPNAFLQDFCVPDTVNLETNGFEVEDSSLSPSVTSSNGEYQYEHTRYSNNILRYISDILMDEEDDLELKPCMLQECLRLQAAEKSFYDVLGHNYPNSSCKDTTDTDGSFSRGTASFESNSSSCSIDNSYESDWVNHVGEFDCSSLQLKTPVVEKNYHYVIEAANDIHNGSWNAIQPGIVQEFSASAVPREKRSHKMNVDVTCNEQEGRGSKLSAIFSDELEPPQILDEVLLYQRGKAKGTDSHSKKVSTTNNAPAVDFWTMLTQCAQAVASYNQRNTNELLKQIRQHSSPFGDGLQRLAHYFANGLEIRLAAETPSYKPLDLATAGDMLKAYKLFVTSSPLQRMTNVFLTNTIFRLVKNESSVHIIDFGICYGFQWPCLIKKLSSRPGGPPKLRITGIDLPRAGFRPAERVEETGRRLENYCKKFNVPFEYNCIAQKWETVRLEDLKMDRNEITVVSCLYRLKNMPDETVAANCPREALLKLIRMINPRIFFHGVVNGSYSAPFFLTRFREALYHFSSLFDMFEANVPREDTQRLMLERELFGRDAINVISCEGAERVERPETYKQWQLRNMRVGFKQIRLDSDLVNVTKAMVKREHHKDFAVDEDGKWVLHGWKGRVLNAFSAWVPA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04442 630 ProSiteProfiles GRAS family profile. 251 628 IPR005202 -
Trre11g04442 630 Pfam GRAS domain family 263 627 IPR005202 -
Trre11g04442 630 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 210 621 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04442 Trre-Chr11 56716945 56718837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04442 49 629 GRAS Transcription Factor Family AT2G29060 43.569 9.88e-168 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre11g04442 GRAS 1.8e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04442 - - cam:101504630 961.444