Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04441 ATGCTTTCTCCGAACTTTCTGCAAGATTTTGGTGTTCCTGACACAGTAAACCCGATAACAAATGGATTTGAGTTGCAAGATTCATCATCACCTTCTTCTATCACAAGATATTCCAATTACATCCTCGGATACATAAGTGACATCCTGATGGATGAAGAAGATGACTTGGAGCTTAAACCTTGCATGTTGCAGGAATGTTTAAGACTCCAAGCTGCTGAAAAATCATTCTATGATGTTCTTGGTCACAACTATCCTAATTCGTCGTGTGAAGATACCACCGACACAGATGGAAATTTCAGTCGAGGCACTGCTAGTTTTGAGAGCAATAGCAGCAGCTGCTCCAATGATAACTCATATGAGTCCGATTGGGTCAACCATGTTGGTGAGTCCAATTGTTCTTCCTTACAACTACAAACCCGTGTAGTGACAGAAGCTGCTAATGATATTCACAATAGAAGTTGGAATGCCATTCAGCCACGGATGGTGGAAGATTTTTCAGCTTCAGTAGTACCAAGAGAAAAGAGAAGTCATAAGATGAATGGTGATGATACTTGTATTGAACAAGAGGGAAGAGGTATCAAGCTTCCAGCTATCTTCTCCGATGAATTAGAGCCACCAGAGATCTTAGACGAGGTACTGCTTTGTCAGGCAGGAAGGACACAAAACCAACAACCATCAAATAATGTCAATTCAGGAGGGAAGGCAAAGGGAACGGGTTCACGTTCGAAGAAAGTATCTACTACTAATAATTCCCCAGCTGTAGATTTGTGGACTATGCTAACTCAATGTGCGCAGGCCGTGGCGAGCTACGATCAAAGGAATACAAATGAGCTACTCAAGCAGATTAGGCAACATTCTTCACCTTTCGGCGGACTCCAGCGTTTAGCTCATTACTTTGCCAATGGTCTTGAGATAAGATTGGCTGCCGAGACACCATCGTATAAGCCACTTGATCTGGCTACTGCTGGAGATATGTTGAAAGCTTACAAACTATTCATTACCTCATCTCCTTTGCAGAGAATGACGAATATGTTGTTAACCAATACGATATTCAGACTAGTGAAGAATGAGAGCAGCGTTCATATTATCGATTTTGGAATTTGCTATGGTTTCCAATGGCCTTGCCTTATCAAAAAGCTTTCATCAAGACCCGGTGGTCCTCCAAAGCTTCGAATTACGGGAATTGATCTCCCTCAGGCCGGATTTAGGCCTGCAGAGAGGGTCGAGGAAACCGGACGGCGTTTAGAAAACTACTGCAAGAAGTTCAATGTACCATTTGAATACAACTGCATTGCACATAAATGGGAAACTATCCGTCTCGAGGATCTAAAGATAGACAGGAATGAAATAACAGTTGTTAGTTGTTTATACAGACTGAAGAACATGCCTGATGAAACTGTAGCAGCGAATTGTCCAAGGGAAGCTTTGTTGAAGCTGATCAGGAAGATTAATCCAAAAATCTTCTTCCATGGTGTTGTCAATGGAAGTTATAGTGCACCGTTTTTTCTGACTCGGTTTAAGGAAGCACTATACCACTTCTCATCATTGTTTGATATGTTTGAGGCTAATGTGCCTCGTGAAGACACGCAGAGGTTAATGCTTGAGAGAGAGTTGTTTGGAAGGGATGCCATAAATGTTATAGCTTGTGAGGGTGCAGAGAGAGTTGAAAGGCCTGAGACCTACAAGCAGTGGCAGCTCAGGAACGGGAGAGCCGGATTCAAACAAATCAGGTTTGATTCTGACTTGGTGAATGATACCAAAGTAATGGTGAAGAGGGAATACCATAAAGATTTTACAGTTGATGAAGATGGTAAGTGGGTTTTGCACGGATGGAAGGGACGTGTTTTGAATGCTTTATCTGCTTGGGTTCCTGCTTAA 1878 0.4239 MLSPNFLQDFGVPDTVNPITNGFELQDSSSPSSITRYSNYILGYISDILMDEEDDLELKPCMLQECLRLQAAEKSFYDVLGHNYPNSSCEDTTDTDGNFSRGTASFESNSSSCSNDNSYESDWVNHVGESNCSSLQLQTRVVTEAANDIHNRSWNAIQPRMVEDFSASVVPREKRSHKMNGDDTCIEQEGRGIKLPAIFSDELEPPEILDEVLLCQAGRTQNQQPSNNVNSGGKAKGTGSRSKKVSTTNNSPAVDLWTMLTQCAQAVASYDQRNTNELLKQIRQHSSPFGGLQRLAHYFANGLEIRLAAETPSYKPLDLATAGDMLKAYKLFITSSPLQRMTNMLLTNTIFRLVKNESSVHIIDFGICYGFQWPCLIKKLSSRPGGPPKLRITGIDLPQAGFRPAERVEETGRRLENYCKKFNVPFEYNCIAHKWETIRLEDLKIDRNEITVVSCLYRLKNMPDETVAANCPREALLKLIRKINPKIFFHGVVNGSYSAPFFLTRFKEALYHFSSLFDMFEANVPREDTQRLMLERELFGRDAINVIACEGAERVERPETYKQWQLRNGRAGFKQIRFDSDLVNDTKVMVKREYHKDFTVDEDGKWVLHGWKGRVLNALSAWVPA 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04441 625 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 189 616 IPR005202 -
Trre11g04441 625 ProSiteProfiles GRAS family profile. 247 623 IPR005202 -
Trre11g04441 625 MobiDBLite consensus disorder prediction 219 249 - -
Trre11g04441 625 Pfam GRAS domain family 258 622 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04441 Trre-Chr11 56713779 56715656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04441 37 624 GRAS Transcription Factor Family AT2G29060 44.878 4.20e-170 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre11g04441 GRAS 3.6e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04441 - - cam:101504630 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04441 11 56713779 56715656 Trre11g04441 11 56713779 56715656 ECH
Trre11g04441 11 56713779 56715656 Trre7g03245 7 30788902 30790902 PCT