Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04439 ATGGATCCAAATTTCTTAGGATTTGAAACAACCTTCGAAATCGACGACTATGGTAACATTCATTTTCTCTCTAACCCAAATCCAACCGCTCATGATGATCCTTATTTCTATCCACCACCCTATGTGGACCCACCACAACCGAGTTATTCTGACTCACTATTCAACTCGGAGGAGCATCCACTCGTTTCCACTGACCCTTCTTCTGAAGACAATGATTTTTCAGAAACAGTTAAATACATAAGTCAAATTCTCATGGAAGAAGATTTTCAACAAAAACCTTGTATGTGTTATGACCCAATTACTCTTCAACATACTGAGAAAATTTTCTTTGATGCTTTGGAATCTAAATCACCTCTTTCACCTAATCAACACCCACTTGATGTTCTTCAGATTCCTAGTTCTTCTACTGATTCTCATTCTTCTGGAAACAACAGTTCTTGTTCTAATGACTTGTTGAAGCCTCTTTCTCCTGATACACCTGTTTCAGGTAGTACTGATTCTGGTTTTAGTTCAATTTCAAGTGTTAAATCTCAGTTTATTGTTCCTAATCATGGTTTGAATAATAATAATGATAGTATTAGTGATGGGGTTTTGGATTTGGATTCTTCTGAGACTAAGGTTTTAGCTCAGAATATTTTTAGTGATGTTGATTCTATGTTGCAGTTTAGAAAAGGTTTAGAGGAAGCTAGTAAATTTCTTCCTCAAAAACCTCAGCTTTTTACTGGTTTGGAGTCTCATGAGTCTAAGGGAAGGGTTGAAGTAATTAAGAAAGAGGGTAGTGTTAGGGAAAATTCCAATTCGAGTTATTCGAATTCGAGTTCACAAGGTTTGTTGAAGAGTAGAAAGAATCATGAGCGGCAAAGTAGTGAAGATGAAGAAGGAAGAAGTAATAAACAGTCTGCAGTTTGTGTTGAGGAGAGTGAAATAACTGAGATGTTTGATAGGGTTTTGCTTAGTGTCGAAAATGTGCCGTTGTGTGCTGAAAACAAGGATGGATCGGTGGTGGAGAGTAGTGCGAAGGTTGGTGAATCCGATGGAAGAGGGAAAACGCGTTCTAAGAAACCAGGGAAGAAGAAGGAAACTGTGGATTTGAGGACCCTTTTGGTTCTTTGTGCACAAGCTGTGTCTGCTAGTGACAATAGGACTGCTAATGAATTGTTAAAGCAGATTAGGCAGCATTCTTCGCATTCAGGTGATGCGTCGCAGAGGTTGGCTCATTACTTTGCAAATGGGCTCGAAGCGCGTATGGTTGGTGCTGGTACCGGTACACAGATATTGTATATGAGCCAGAAGATGTTTAGTGCTGCTGATTTCTTGAAAGCTTACCAAGTTTTTATATCTGTTTGCCCTTTTAAAAAAATTGCACATTTCTTTGCAAATAAAATGATTTTGAAAACAGCTGAAAAGGCAAAAACCCTTCACATTATTGATTTTGGTATCTTATATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTGTCGAAAAGAGATGGTGGACCTCCCAAGTTACGCATCACCGGAATTGAGTATCCCCAAGCTGGCTTTCGACCGGCTGAAAGAATCGAGGAAACTGGCCGGCGTCTAGCTAACTATTGTCAGCGTTTCAATGTTTCATTTGAATACAAGGCCATACCATCGCGACACTGGGAAACCATTCAAATTAAAGACCTTAATATTAAGAGTGACGAGGTAGTTGCTGTGAACTGTCTGATAAGGTTTAAGAATTTACATGATGAGACAATTGAAGTAAACAGTCCCAAAGATGCAGTTTTGAAGTTAATCAGGAAGATAAATCCGAGTATATTTGTTCAATCCATAGTAAATGGAACTTATAATGCACCTTTCTTTTCCACGCGCTTCAAGGAGTCGCTTTTCCATTATTCTGCAATGTATGATATGTATGATACTCTCATATGCCGTGAAAATGAATGGAGGTTGATGCTCGAGAGAGAGTTTTTGGGTCGGGAGATTATGAATGTCGTAGCATGTGAAGGTCTTGAGAGGGTTGAGAGGCCTGAGACTTATAAACAATGGCAGGTTGGAAAGGCCGCATTTTGTATGGTTCGGCTTGTTGGGTGCCAGCATAATTATATGTTACTGAACTCGTTTCGTTTGAGAACTCATTGGGTTGAAAGGTTCAGATATGCTGCTATGCCCTATTTGCTTAACCTTCAGCTATGCGATGAATATTCTTCCCAGCTTCACACCAAGTAA 2214 0.393 MDPNFLGFETTFEIDDYGNIHFLSNPNPTAHDDPYFYPPPYVDPPQPSYSDSLFNSEEHPLVSTDPSSEDNDFSETVKYISQILMEEDFQQKPCMCYDPITLQHTEKIFFDALESKSPLSPNQHPLDVLQIPSSSTDSHSSGNNSSCSNDLLKPLSPDTPVSGSTDSGFSSISSVKSQFIVPNHGLNNNNDSISDGVLDLDSSETKVLAQNIFSDVDSMLQFRKGLEEASKFLPQKPQLFTGLESHESKGRVEVIKKEGSVRENSNSSYSNSSSQGLLKSRKNHERQSSEDEEGRSNKQSAVCVEESEITEMFDRVLLSVENVPLCAENKDGSVVESSAKVGESDGRGKTRSKKPGKKKETVDLRTLLVLCAQAVSASDNRTANELLKQIRQHSSHSGDASQRLAHYFANGLEARMVGAGTGTQILYMSQKMFSAADFLKAYQVFISVCPFKKIAHFFANKMILKTAEKAKTLHIIDFGILYGFQWPILIKFLSKRDGGPPKLRITGIEYPQAGFRPAERIEETGRRLANYCQRFNVSFEYKAIPSRHWETIQIKDLNIKSDEVVAVNCLIRFKNLHDETIEVNSPKDAVLKLIRKINPSIFVQSIVNGTYNAPFFSTRFKESLFHYSAMYDMYDTLICRENEWRLMLEREFLGREIMNVVACEGLERVERPETYKQWQVGKAAFCMVRLVGCQHNYMLLNSFRLRTHWVERFRYAAMPYLLNLQLCDEYSSQLHTK 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04439 737 MobiDBLite consensus disorder prediction 257 302 - -
Trre11g04439 737 Pfam GRAS domain family 364 680 IPR005202 -
Trre11g04439 737 ProSiteProfiles GRAS family profile. 355 737 IPR005202 -
Trre11g04439 737 MobiDBLite consensus disorder prediction 261 278 - -
Trre11g04439 737 MobiDBLite consensus disorder prediction 53 72 - -
Trre11g04439 737 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 285 692 IPR005202 -
Trre11g04439 737 MobiDBLite consensus disorder prediction 279 299 - -
Trre11g04439 737 MobiDBLite consensus disorder prediction 332 358 - -
Trre11g04439 737 MobiDBLite consensus disorder prediction 342 358 - -
Trre11g04439 737 MobiDBLite consensus disorder prediction 121 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04439 Trre-Chr11 56699506 56701940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04439 76 680 GRAS Transcription Factor Family AT1G07530 50.158 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre11g04439 GRAS 2.6e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04439 - - cam:101504630 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04439 11 56699506 56701940 Trre7g03246 7 30794414 30796249 PCT