Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04432 ATGTGGATCATGGTAGATGCTAGAATCCCCGGTGTTTACAATGGCGGTTCATGGCAAACCGCTCACGCCACATTTTACGGCGGTTCCGATGCTTCCGGCACCATGGGTGGAGCATGTGGTTATGGAAATTTATACAGTCAAGGTTATGGAGTTAACACTGCAGCATTAAGTACAGCACTTTTCAACAGTGGACTTAGCTGTGGTTCTTGTTTTGAATTGAAGTGTGCAAATGATAAACAATGGTGTCACTCTGGTAGTCCTTCCATTTTCATTACAGCTACTAATTTTTGTCCTCCTAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGCCCTCATTTCGACCTCGCCATGCCTATGTTTCTCAAGATCGCCGAATATCGCGCCGGAATCGTCCCTGTCGCCTATCGCCGGGTACCGTGTAGGAAGCGCGGTGGGATCAGATTCACAATTAACGGATTCCGTTACTTTAACTTAGTACTAATCAGCAACGTCGCGGGTGCAGGTGATATCGTGCGCACCTACGTTAAAGGCACAAGAACTGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCTAATTCTGTTTTAGTGGGCCAGGCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCAGTTCCACTTCTTGGAACATTGCCCCACAAAATTGGCAATTTGGTCAAACTTTTACCGGAAAGAATTTCCGTGTTTGA 735 0.4694 MWIMVDARIPGVYNGGSWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTRTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRSSTSWNIAPQNWQFGQTFTGKNFRV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04432 244 FunFam Expansin 7 146 - -
Trre11g04432 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 239 IPR007117 -
Trre11g04432 244 CDD DPBB_EXPA_N 18 145 - -
Trre11g04432 244 PRINTS Expansin/Lol pI family signature 35 53 IPR007118 GO:0005576
Trre11g04432 244 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Trre11g04432 244 PRINTS Expansin/Lol pI family signature 17 32 IPR007118 GO:0005576
Trre11g04432 244 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Trre11g04432 244 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Trre11g04432 244 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Trre11g04432 244 FunFam Expansin 150 242 - -
Trre11g04432 244 Pfam Expansin C-terminal domain 151 228 IPR007117 -
Trre11g04432 244 PANTHER EXPANSIN-A15 14 242 IPR002963 GO:0009664
Trre11g04432 244 Gene3D - 6 146 IPR036908 -
Trre11g04432 244 SUPERFAMILY Barwin-like endoglucanases 17 168 IPR036908 -
Trre11g04432 244 PRINTS Expansin signature 149 161 IPR002963 GO:0009664
Trre11g04432 244 PRINTS Expansin signature 89 99 IPR002963 GO:0009664
Trre11g04432 244 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Trre11g04432 244 PRINTS Expansin signature 108 125 IPR002963 GO:0009664
Trre11g04432 244 PRINTS Expansin signature 75 86 IPR002963 GO:0009664
Trre11g04432 244 PRINTS Expansin signature 225 241 IPR002963 GO:0009664
Trre11g04432 244 PRINTS Expansin signature 125 138 IPR002963 GO:0009664
Trre11g04432 244 PRINTS Expansin signature 48 62 IPR002963 GO:0009664
Trre11g04432 244 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Trre11g04432 244 Pfam Lytic transglycolase 53 140 IPR009009 -
Trre11g04432 244 SUPERFAMILY PHL pollen allergen 147 239 IPR036749 -
Trre11g04432 244 SMART dpbb_1 53 140 IPR007112 -
Trre11g04432 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 36 150 IPR007112 -
Trre11g04432 244 Gene3D - 150 242 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04432 Trre-Chr11 56650033 56651528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04432 1 244 Expansin Gene Family AT2G39700 86.475 5.91e-164 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04432 - - gmx:100811296 495.352