Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04425 ATGTCTCGAAAATCAGAACATATTCATGAGTCTGAGTTTGACTACTATGAGTATAAATATTATGATGACTTGAAGGATGGTGACTATAGGTTGAAAATCTCAGGTTCAACATATAGGTGTCCATTCTGTAAACACAAGGATTATTACTCTTGGAGTGAACTTCTGAGGCATGCTGCTAGAATCGCGGGTGATTCGCGTGAGACGGTGAAGGAAAGTGCTAGACACTCTGCACTTGAAATGTACATTGGCAAATACAAGTTACCTTCCGTTAAAACTGGTCAAGATAAGTTTGCTGCTGTTAAAACTGGTCAAGATAAGTTTGCTGCTGTTAAAACTGGTCAAGGTAAGTCAGCTGCTGTTAAAACTTGTCAAGATAAGTTAGCTGCTGTTAAAACTGCTCAAGATAAGTCAGCTTCTTCATGTATTAATGTTGATAAGGATAGGTCACATAATGCTAACGTTGCTAAGAATCAGTCATCTAATGTGACTGTTGCTGGAGATGATTTGTTTGTGTGGCCATGGATGGTAATTCTAGCAAACAATGTTACCACATTTGACCCGAAAAGCGGAAAGCATGTTGGAAAGAATCATACTAAAATTAAGGAGGAGCTGCTCTTGAAAGGGTTTAACCCCCTGAAAGTTACTGCACTTTGGAACTTTAAAGGTCAGACACCCTTTGCGATTGTTGAGTTTGGGAAAGAGTGGGATGGTTTCCACAATGCCATGAAGTTAGAACGGAGCTTTCTAGCAGAGCACTGTGGTAAGAAGGATTACCTGGATTTATGGCGGCGGGGTCGTGGAGATAGACTTTATGGGTGGATGGCACGTGCTGACGATTATAATAATGTTAGGGATATATTTGGAAAACACCTCCGGGAAAATGGGGATTTGAAAACTGTTTCCGGAAAAGAAGCCGAGGACGATAGGAAAGCAAAGAAGCTTGTCTTTGGTTTGGCCAATACTTTAATGCAGAAGAACAAGGAATATGAAGAGGCAGCAAGCAAGTATCACGAGGCTAGTGAGGACCTAACGAAAGTAATGGCTGAAAAAGAGAAGTTGGTTGAACATTTTAATAACGAAATAAGCAAGATAAGGCAGGTTGAACGCGATTATCTGGAGAGTTTGTCCAAGGATCATGAAAAATCCAGGCTGGAACTGGAAGCTCGGAGGAATGAACTTATATCCCGTGAAAAGGATCTGCAGAAGCGTCAAGCATACAATCATAATGAGAGAGAAAAACTATATCTTGAAAAGAAAAGAAATGAGATGGCAATAGCAGAGCAAAAAAAGGCTGATGAACAAATGATGCATTTGGCTGAAGAGCACAAGAAAGCAAAAGAGAAACTTCACAAGAAAATTCATGAACTGGAGAGAGGACTTGATGCAAAACAAGCATTGGAATTGGAAATTGAACAGCTGAGAGGAGCTATGCAAGTAATGAATCGCATTGGAGAGACTGATCTGGAAGAGAAGAAAAAACTGGAGGCAATAAAAATGGATCTGCAAGAAAAGGAAGAGGAATTGGAAGGCGTGGAAGATCTTCAACAAACATTGGTTATCCAGGAGCGCCAAACTAATGACGAGTTGCAAGATGCCCGCAAAAAATTAATATATTGGATTGGCTGCCCAACGACAAAGACTCGAGCCACAATTTCAGTGAAAAGGTTGGGCGAACTTGATGGTAAGCCATTTTTGGAAGCAGCTAAGAGAAAGATTTCTGCTGAAGTGAATGCGAAGACAGCAACCAAGAGAGAACTTTTCGAGGAAGCAAAAGTGAAAGCAATGCTGTGGTGCACACAGTGGGATGAATATCTTAGGGATCCTAGCTGGCATCCTTTCAAAGTTGTAACTAACAAAGACGGGATCTCCAAGGAAATTTTAGACGAAGAAGATGAAAAGTTGAGAAGTTTGAAGGATGAGTTTGGAGATGAGGTGCATGATGCAGTAGCTACAGCTCTAAAGGAGTTAAATGAGTACAATCCTAGTGGTAGGTACCCAATACCGGAACTTTGGAATTATAAAGAAGGAAGGAAGGCTTTACTGAAGGAGGGTGTTTCTCTTTTACTAAACAAATGGAAGCAATTGAGACCAAAACCAAATACTAAGCGAAAGAGAACTTGA 2121 0.4059 MSRKSEHIHESEFDYYEYKYYDDLKDGDYRLKISGSTYRCPFCKHKDYYSWSELLRHAARIAGDSRETVKESARHSALEMYIGKYKLPSVKTGQDKFAAVKTGQDKFAAVKTGQGKSAAVKTCQDKLAAVKTAQDKSASSCINVDKDRSHNANVAKNQSSNVTVAGDDLFVWPWMVILANNVTTFDPKSGKHVGKNHTKIKEELLLKGFNPLKVTALWNFKGQTPFAIVEFGKEWDGFHNAMKLERSFLAEHCGKKDYLDLWRRGRGDRLYGWMARADDYNNVRDIFGKHLRENGDLKTVSGKEAEDDRKAKKLVFGLANTLMQKNKEYEEAASKYHEASEDLTKVMAEKEKLVEHFNNEISKIRQVERDYLESLSKDHEKSRLELEARRNELISREKDLQKRQAYNHNEREKLYLEKKRNEMAIAEQKKADEQMMHLAEEHKKAKEKLHKKIHELERGLDAKQALELEIEQLRGAMQVMNRIGETDLEEKKKLEAIKMDLQEKEEELEGVEDLQQTLVIQERQTNDELQDARKKLIYWIGCPTTKTRATISVKRLGELDGKPFLEAAKRKISAEVNAKTATKRELFEEAKVKAMLWCTQWDEYLRDPSWHPFKVVTNKDGISKEILDEEDEKLRSLKDEFGDEVHDAVATALKELNEYNPSGRYPIPELWNYKEGRKALLKEGVSLLLNKWKQLRPKPNTKRKRT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04425 706 Pfam XS domain 167 281 IPR005380 GO:0031047
Trre11g04425 706 Coils Coil 491 521 - -
Trre11g04425 706 Coils Coil 409 483 - -
Trre11g04425 706 CDD RRM_like_XS 170 280 IPR005380 GO:0031047
Trre11g04425 706 Gene3D XS domain 163 337 IPR038588 -
Trre11g04425 706 Coils Coil 319 367 - -
Trre11g04425 706 PANTHER RIBONUCLEASE P SUBUNIT P38 2 705 IPR045177 GO:0080188
Trre11g04425 706 Pfam XH domain 554 696 IPR005379 -
Trre11g04425 706 Pfam XS zinc finger domain 40 78 IPR005381 GO:0031047
Trre11g04425 706 Coils Coil 372 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04425 Trre-Chr11 56617668 56621839 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04425 XH 3.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04425 - - mtr:25487893 900.197