Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04423 ATGGGACTTTGTTTTAGCACTAAAGTTAAAGCTGAAAATCCTTATAAAAACTCTGGGCCTCAGACTGCTGGAAGTGAGGATGATATCTTGCGGCGGTCATCGAATTTGAAGAGCTATACCTTTGCAGAACTTGAGATTGCAACGGGAGATTTCGATGGATATAGTATAATAGGACTTGGTGGTTTTGGAGTGGTTTATAAGGGATGGATTCATCAGAATTCATTGGCTGCTACCAAACCTGGCACTGGCATTTCTGTTGCTGTCAAAAGACTAAGACCAAAGAGCTTACAAGGTCATAGGGAGTGGTTGACCGAAATCAACTATCTTGGAAAGTTTTCTCATCCTAATTTAGTTAGATTGATTGGTTATTGCCTTGAAGATCGCCTTGAAGATCAATGCCGCCTTCCCGTTTATGAACTTATGCCCCTTGGAAGTTTGGAGGATCACTTGTTCAAAAGATATCGAATTAGAAAGCTAGATCCCGTCGAGCCTCTTTCTTGGAGCATCCGTCTAAAGGTTGCTCTTGATGCTGCCAAAGTACTGGCATTTCTGCACACTGATGCTACAACAAAAGTGATATATAGAGATTTCAAGACTTCAAATATCTTGTTGGATTCTGATTATAATGCAAAGCTCTCTGATTTTGGTCTGGCAAGGGATGGTCCGAAGGAAGGAAGCCACGTCTCTACCAGGATAATGGGAACTGAGGGATATGCAGATCCTGAATATGTAGACTCGGGTCATCTTACTACTAAGAGTGATGTCTATAGTTTTGGAGTTGTACTGCTGGAAATATTTGTTGTATTTTATTTCAAAAGTTTATAA 825 0.4048 MGLCFSTKVKAENPYKNSGPQTAGSEDDILRRSSNLKSYTFAELEIATGDFDGYSIIGLGGFGVVYKGWIHQNSLAATKPGTGISVAVKRLRPKSLQGHREWLTEINYLGKFSHPNLVRLIGYCLEDRLEDQCRLPVYELMPLGSLEDHLFKRYRIRKLDPVEPLSWSIRLKVALDAAKVLAFLHTDATTKVIYRDFKTSNILLDSDYNAKLSDFGLARDGPKEGSHVSTRIMGTEGYADPEYVDSGHLTTKSDVYSFGVVLLEIFVVFYFKSL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04423 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Trre11g04423 274 Gene3D Transferase(Phosphotransferase) domain 1 141 270 - -
Trre11g04423 274 SUPERFAMILY Protein kinase-like (PK-like) 30 267 IPR011009 -
Trre11g04423 274 PANTHER OS01G0588500 PROTEIN-RELATED 28 265 - -
Trre11g04423 274 Gene3D Phosphorylase Kinase; domain 1 22 140 - -
Trre11g04423 274 Pfam Protein tyrosine and serine/threonine kinase 56 267 IPR001245 GO:0004672|GO:0006468
Trre11g04423 274 FunFam Serine/threonine-protein kinase BIK1 18 140 - -
Trre11g04423 274 ProSitePatterns Protein kinases ATP-binding region signature. 57 89 IPR017441 GO:0005524
Trre11g04423 274 ProSiteProfiles Protein kinase domain profile. 51 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04423 Trre-Chr11 56587209 56589214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04423 6 267 Glycoside Hydrolase AT3G07070 46.970 3.38e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre11g04423 PK_Tyr_Ser-Thr 4.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04423 - - tpra:123896631 401.749