Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04420 ATGGGAGTTTGTTTGAGTGCTCAAATCAAAGCTGAAAGTCCTTATAACACTGGGTTGAATTCAAAGAACTCTAATTCAGCTGGAAATGATCTGAGCAGTAATAATAGTAAGGTTTCAGCTGGATCAGTACCTCAGACTCCTCGAAGCGAGGGTGAGATCTTGAAATCATCCAATGTAAAGAGCTATACCTTAGCAGAACTTAAGTCGGCCACTAGAAATTTTCGTCCGGATAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGATGGATTGATGAGAATTCATTGGCACCTGCTAAACCTGGTACTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGAAAGCTTCCAAGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTCGGACAATTTTCTCATCCTCATTTGGTGAGATTGATTGGTTATTGCCTTGAAGATGAACACCGCCTTCTTGTCTATGAGTTTATGCCCCGTGGAAGTTTGGAGAACCACTTGTTCAGGAGAGGCTCGTATTTTCAACCTCTTTCTTGGACCCTCCGTCTGAAGGTTGCCCTTGATGCTGCAAAAGGGCTTGCATTTCTGCACAGCTCTGAAACTAAAGTGATATATAGAGACTTCAAGACTTCAAATATCTTGTTGGATTCTGATTATAACGCAAAGCTTTCTGATTTCGGGTTGGCAAAGGATGGTCCAACAGGTGACAAAAGCCACGTCTCTACCCGAGTAATGGGAACTTATGGATACGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTACTAAGAGCGACGTTTATAGTTATGGAGTTGTCCTGCTGGAAATGTTATCTGGTAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAGCACAGCTTGGTGGAATGGGCTAAACCGTATCTCGCAAACAAACGTAAGGTTTTCAGTGTGTTAGACAGCCGACTTGAAGGACAATATTCATCAGATGAGTCCTACAAGGTAGCCACACTTGCTTTGCGATGCTTATCTACAGAATCCAAGTACAGGCCCAACATGGATGAGGTTGTTAGAATATTGGAGCAACTCAAGGTTCCTAATGTGAATGTAGGCAATCAAAGGCGTTATCGGAGAAAAAGTGCTGGTGATGTTACCCATGCGAGGACTCGCACAACATCTTGTGCGAGTACAAAGGCTCACACATCTTATCCCCGTCCTTCGGCATCTCCTCTCTATGCTTGA 1230 0.4358 MGVCLSAQIKAESPYNTGLNSKNSNSAGNDLSSNNSKVSAGSVPQTPRSEGEILKSSNVKSYTLAELKSATRNFRPDSVLGEGGFGSVFKGWIDENSLAPAKPGTGIVIAVKRLNQESFQGHREWLAEVNYLGQFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALDAAKGLAFLHSSETKVIYRDFKTSNILLDSDYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEMLSGKRAVDKNRPSGQHSLVEWAKPYLANKRKVFSVLDSRLEGQYSSDESYKVATLALRCLSTESKYRPNMDEVVRILEQLKVPNVNVGNQRRYRRKSAGDVTHARTRTTSCASTKAHTSYPRPSASPLYA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04420 409 FunFam Probable serine/threonine-protein kinase PBL8 160 376 - -
Trre11g04420 409 SUPERFAMILY Protein kinase-like (PK-like) 51 356 IPR011009 -
Trre11g04420 409 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Trre11g04420 409 MobiDBLite consensus disorder prediction 372 409 - -
Trre11g04420 409 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Trre11g04420 409 MobiDBLite consensus disorder prediction 15 54 - -
Trre11g04420 409 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Trre11g04420 409 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Trre11g04420 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Trre11g04420 409 MobiDBLite consensus disorder prediction 382 400 - -
Trre11g04420 409 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04420 409 CDD STKc_IRAK 80 359 - -
Trre11g04420 409 Gene3D Transferase(Phosphotransferase) domain 1 160 379 - -
Trre11g04420 409 PANTHER OS01G0588500 PROTEIN-RELATED 36 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04420 Trre-Chr11 56579269 56581703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04420 52 356 Glycoside Hydrolase AT3G07070 48.039 4.65e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre11g04420 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04420 - - gmx:100798404 675.241