Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04414 ATGAAGCTTTTGAACAACCCTTCCCACCCTTTTCCTTTTTCTTCTCAATCTCATATTCATTCATCCATCATGGAACAACAACAACAACAATCTTCCCCTTCTACTAACCCTAATAATAAACTTCATCTTGCTGTTGGTAAATCCCTTCACAAAACCACCACCTTACTTCAATGGACTTTCAATCACTTTAAGAACCAAGAAATTGTCTTGATTCATCTTTATCAACCTTCTCCTGTTATACCCACTTTATTGGGAAAAATGCCAGCTTCTCATGCTAATCCTGAAGTGGTATCTGCTTTTAGAAGAGAGGAAAGAGAACAGACTGTGAGGTTTACTGATAAGTATTTGAGCATTTGTTGTGCAGCTAAGGTGAAGGCAAGCGTTATTGTAGCGGAAACTGATCAAATCCAAAAAGGAATTGTTGATTTGGTTGTTAGCCATAATATTAGGAAGCTTGTCATTGGAGCTGAAACGGAAAATTTCATGAAAGTGAAAAGGAGCTCCGGAAAAGCAAATTACACTTTCAAACATGCTCCTCCGTTCTGTGAAATATGGTTTATATATAAAGGCAGACACATTTGGACAAAAGAGGCTTCTGAAACACCGTGTTCTTTGTCTTCATGTGCTCAACCTGAGATTGAAACCACAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAACGAATTACCCCATTTGGAATATCTTCGACCAAATTCTCCTAGAACTGCAGTAAGTTCTGGAATTAGAAGCTTGGATCTGGGGGAAATCATAGAAACCGAAGCCACTAATTCATCCAAATCATCCAGTTGCAGCAGTTATTGTTCTCCACAAAATTCTACTGCGGTTTATCTAGATGCATATTCAGAGATCATGGAAGAAAGAATTAACAGTCAACTTATTGAAACCAAAAGAGAAGCTGAGGCAGCAACAGATGAGTCATTTGCAGAACTGATCAAGTGCAGGAGGTCGGAAGCCGAAGCCGCGGAAGCCATACGGAAAGTCAAATTGTTTGAATCTGCCCATGCACATGAGGTAGAGCTCAGGAAAGAGGCTGAGGTTGCACTTAGAGATACCATACTAGAACAACAAAAGCTCTTAGAAGAAAATGAACATATTTCGGGAGAGCTACAAATGACCATGAGAAATGTGGCCCTACTAGATAGCCGTGCTAAGGAAACAACCCGTAGGCGAGATGAAGCTGCACACGAGCTCTTGCTAATTCAAACATCCATATCAACCTTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTTGAACGGTGGAAAAGTCGTGGACAAATTGGAGCAGCTCATTACAATGGGGTCATTGGGTTTGCTGAAGAATTGCCGGAGTTAGCTGAATTCTCTTTATCAGATATTGAAAATGCTACATGTAATTTTTCCGAGAGCTTTAAAATCGCACAAGGTGGATTTGGTTGTATATATAAGGGGGAGATGTTGGGTAGAACTGTTGCTATAAAGAAGTTCCATCAACAAAATGTGCAAGGACCAGCAGAGTTTCATCGAGAGGTTCAAATTCTTAGTAGTCTCCAACATCCTCATCTATTGACCTTGCTTGGTGTTTGTCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCGAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGTAACATTATCCCTTTGACATGGAATATCAGAGCACGAATGATTGCCGAAATTTCCAGTGCACTATGTTTCTTACATTCTTTTAAACCGGAAGCTATTATCCATGGTGATCTTAAGCCTGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTCAGTAGGCTTGGGACAGAGGAGTCTCTCTATAGTCCTAGTTTCCACTTGAGCACTGAGCCAAAGGGTGCTTTCACATATACAGATCCCGAGTTTCAGCGAACTGGGGTACTAACAACCATGTCTGACATCTACTCCTTCGGGCTTATTATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCAGTTCTAGTTCGCCATGCAGCTTCATGCGGAAAATTGTCATCAATTCTCGATTCTTCAGCTGGAGAATGGCCTTTATCCGTAGCATCACGGTTGGTTGAACTGGGTTTGCAATGTTGCGCACAAAATCGCAGAAACAGACCAGAGTTAACACCTACTCTCGTGAGAGAATTGGAACAGTTACATGTTTCAGAAGAGAGACCGGTGCCATCTTTTTTCCTATGTCCAATCCTTCAGGAAATAATGCACGATCCTCAAATCGCAGCAGATGGATTTACATATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGGCACAATACGTCTCCAATGACTAATTTAAAATTGAGTCACTTGCATCTTACTCCCAATCACTCAATTAGACTTGCCATCCAAGATTGGCTCTGCAAATCATAA 2463 0.4121 MKLLNNPSHPFPFSSQSHIHSSIMEQQQQQSSPSTNPNNKLHLAVGKSLHKTTTLLQWTFNHFKNQEIVLIHLYQPSPVIPTLLGKMPASHANPEVVSAFRREEREQTVRFTDKYLSICCAAKVKASVIVAETDQIQKGIVDLVVSHNIRKLVIGAETENFMKVKRSSGKANYTFKHAPPFCEIWFIYKGRHIWTKEASETPCSLSSCAQPEIETTESLRCRSFQYGKNELPHLEYLRPNSPRTAVSSGIRSLDLGEIIETEATNSSKSSSCSSYCSPQNSTAVYLDAYSEIMEERINSQLIETKREAEAATDESFAELIKCRRSEAEAAEAIRKVKLFESAHAHEVELRKEAEVALRDTILEQQKLLEENEHISGELQMTMRNVALLDSRAKETTRRRDEAAHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQIGAAHYNGVIGFAEELPELAEFSLSDIENATCNFSESFKIAQGGFGCIYKGEMLGRTVAIKKFHQQNVQGPAEFHREVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNIIPLTWNIRARMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLGTEESLYSPSFHLSTEPKGAFTYTDPEFQRTGVLTTMSDIYSFGLIILQLLTGRTPVGLAVLVRHAASCGKLSSILDSSAGEWPLSVASRLVELGLQCCAQNRRNRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHNTSPMTNLKLSHLHLTPNHSIRLAIQDWLCKS 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04414 820 Pfam U-box domain 750 819 IPR003613 GO:0004842|GO:0016567
Trre11g04414 820 CDD RING-Ubox_WDSUB1-like 751 806 - -
Trre11g04414 820 ProSiteProfiles Protein kinase domain profile. 476 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04414 820 CDD STK_N 40 190 - -
Trre11g04414 820 SMART Ubox_2 753 816 IPR003613 GO:0004842|GO:0016567
Trre11g04414 820 SUPERFAMILY Protein kinase-like (PK-like) 460 736 IPR011009 -
Trre11g04414 820 ProSiteProfiles U-box domain profile. 749 820 IPR003613 GO:0004842|GO:0016567
Trre11g04414 820 Pfam Protein tyrosine and serine/threonine kinase 481 732 IPR001245 GO:0004672|GO:0006468
Trre11g04414 820 PANTHER OS02G0152300 PROTEIN 42 814 - -
Trre11g04414 820 Coils Coil 294 314 - -
Trre11g04414 820 SUPERFAMILY RING/U-box 747 819 - -
Trre11g04414 820 MobiDBLite consensus disorder prediction 1 41 - -
Trre11g04414 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 750 820 IPR013083 -
Trre11g04414 820 Gene3D Phosphorylase Kinase; domain 1 453 548 - -
Trre11g04414 820 Gene3D HUPs 35 168 IPR014729 -
Trre11g04414 820 Gene3D Transferase(Phosphotransferase) domain 1 549 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04414 Trre-Chr11 56510954 56514624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04414 38 817 U-box Gene Family AT2G45910 36.228 4.94e-167 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre11g04414 PK_Tyr_Ser-Thr 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04414 - - gmx:100788846 1260.74