Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04407 ATGAATTTCTTGAAAGGTCTCATTTGCCAGGCTGCCTCCCACTCCAAAGGTCATATGTTTTCATCCATACAGGAATTCTCTATTATTAAGTACTTTGGTATTGACTGTCATCCCCCTCCTCCTCCATCCATTAAGGAGTATCTCATTGGTCAAAAAGAATCTGAGAAGACTGAGCAATACGTTTTGTATGAAGAGATAGGAAAAGGTTTTACGGGTTCAGTGCATCGTGCTCTCTGCTTGAAGTTCAACGAGATTGTTGCCATCAAAATTTTCGACTATGAACACCACAAATACGGTTTGCATGATCTGTATCGTGAACGAGAGACAATGGCAATGGTAGATCACCCAAATGTGTTGAAGTCACACTGTTCCTTCTTGGGAGAATTTGGGGAAAAAGAACAAGCTCTTTGGGTTGTGATGCCGTTCATGGCAGGGGGTTCATGTCTTCACATCTTGAAAGCTGCACATCTTGATGGATTTGAGGAAGTTCAGATTGTAGCTGTGCTTAATGAGGTGTTGAAGGCTTTACAGTACCGTCACCACCATGGTTATGTCCACCGTGATGTTAAGGCTGAAAACATTTTGATCAACAGTCACGGTGCTGTTATGCTTGGTGATTTGGGCATGTCTGCTTGCCTTTTTGATTCTCGTGATAGGTGGCAATACTCCAGAAACACAATTGTCGGAACACCTTGCTGGATGGCACCTGAGGTCATGGACCTGGATGGTTATAGCTTCAAGTCTATAAGGTAG 753 0.4316 MNFLKGLICQAASHSKGHMFSSIQEFSIIKYFGIDCHPPPPPSIKEYLIGQKESEKTEQYVLYEEIGKGFTGSVHRALCLKFNEIVAIKIFDYEHHKYGLHDLYRERETMAMVDHPNVLKSHCSFLGEFGEKEQALWVVMPFMAGGSCLHILKAAHLDGFEEVQIVAVLNEVLKALQYRHHHGYVHRDVKAENILINSHGAVMLGDLGMSACLFDSRDRWQYSRNTIVGTPCWMAPEVMDLDGYSFKSIR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04407 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Trre11g04407 250 Pfam Protein kinase domain 60 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04407 250 ProSiteProfiles Protein kinase domain profile. 60 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04407 250 Gene3D Phosphorylase Kinase; domain 1 51 142 - -
Trre11g04407 250 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 56 248 IPR047173 GO:0043539
Trre11g04407 250 SUPERFAMILY Protein kinase-like (PK-like) 43 248 IPR011009 -
Trre11g04407 250 SMART serkin_6 60 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04407 250 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Trre11g04407 250 Gene3D Transferase(Phosphotransferase) domain 1 146 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04407 Trre-Chr11 56430796 56437261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04407 45 248 MAP Kinase Kinase Kinase Kinase AT1G79640 60.000 3.62e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Trre11g04407 Pkinase 1.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04407 K08835 - gmx:100780339 268.855