Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04392 ATGTCTCAAAGAATCGGAACAAAGCTATTTGTTAGCAGGTTATCGTTTCACACTACAAAACAAAGGTTGGAATCCTTGTTCTCACCATTCGGAGAACTTACAGAAGCTTCACTTATAATTGACCCAAAAACTCAAAGGCCTAAAGGTTTTGGTTTTGTTTCTTACCAATCTGAAATTCAAGCTCAAAAGGCTATCAAAGCATTGAATGCAACGATAGTTGATGGAAGGATTATTTTTGTTGAACCTGCAAAACCGAAGGACTCGTGA 267 0.3745 MSQRIGTKLFVSRLSFHTTKQRLESLFSPFGELTEASLIIDPKTQRPKGFGFVSYQSEIQAQKAIKALNATIVDGRIIFVEPAKPKDS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04392 88 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Trre11g04392 88 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 87 - -
Trre11g04392 88 Gene3D - 2 88 IPR012677 -
Trre11g04392 88 SMART rrm1_1 8 81 IPR000504 GO:0003723
Trre11g04392 88 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Trre11g04392 88 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 88 - -
Trre11g04392 88 SUPERFAMILY RNA-binding domain, RBD 6 87 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04392 Trre-Chr11 56344145 56345083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04392 11 86 Eukaryotic Initiation Factors Gene Family AT5G06000 44.737 3.57e-12 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04392 - K13195 pcin:129306862 125.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04392 11 56344145 56345083 Trre11g04392 11 56344145 56345083 ECH