Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04389 ATGAAGAGAGGTAGAGAAGAAAAGGGTGAGTTAAATTGTTTGATGCTACTATCCAAAGTTGGTGAAAGTGAAGAAACAAAATCATTCAAAAAATGTGGTTTTAAGTGCAAAACATGCAACAAGGAATTTTCTTCTTTTCAAGCTTTAGGTGGCCATAGAGCAAGTCACAAGAGACCAAAGCTAATCCACAAGTTATTACCAACCATGAAATCAAAGATGCATTCATGCCCTATTTGTGGACTTGAGTTTTCTATAGGACAAGCTCTTGGTGGCCACATGAGAAAACATAATGCTTTTTCTATTATGAAAAATTCAAAAGATTGTTGTGTAAAGTTGAATTCTTGTTTCGACTTGAATTTGACGCCGTTAGAGAATGGTATTGCTTGGACTTGA 393 0.3537 MKRGREEKGELNCLMLLSKVGESEETKSFKKCGFKCKTCNKEFSSFQALGGHRASHKRPKLIHKLLPTMKSKMHSCPICGLEFSIGQALGGHMRKHNAFSIMKNSKDCCVKLNSCFDLNLTPLENGIAWT 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04389 130 Gene3D Classic Zinc Finger 31 96 - -
Trre11g04389 130 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Trre11g04389 130 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Trre11g04389 130 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Trre11g04389 130 Pfam C2H2-type zinc finger 74 96 - -
Trre11g04389 130 Pfam C2H2-type zinc finger 34 59 - -
Trre11g04389 130 PANTHER ZINC FINGER PROTEIN ZAT5 10 121 - -
Trre11g04389 130 SUPERFAMILY beta-beta-alpha zinc fingers 34 96 IPR036236 -
Trre11g04389 130 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Trre11g04389 130 SMART c2h2final6 34 56 IPR013087 -
Trre11g04389 130 SMART c2h2final6 74 96 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04389 Trre-Chr11 56335395 56335787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04389 1 125 C2H2 Transcription Factor Family AT2G28710 48.649 6.78e-33 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04389 zf-C2H2_6 1.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04389 - - gmx:100781211 149.828