Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04380 ATGGTTCAATCTGATGAAGTACGAAAAGGACCATGGACAGAACAAGAAGATTTCAAATTGGTGTCATTTGTTGGATTATTTGGAGACAGAAGATGGGATTTTATTGCTAAGGTATCAGGTTTGAATAGAACTGGTAAGAGTTGTAGGTTAAGATGGGTTAATTATCTTCATCCTGGTCTTAAACGAGGTAAAATGACTCCGAATGAAGAACGACTTGTCCTTGAACTTCAATCCAAATGGGGAAATAGGTGGTCAAGAATTGCGCGAAAATTACCGGGACGAACCGATAATGAGATAAAGAATTACTGGAGAACTCACATGAGGAAGAAGGCTCAGGACAAAAAGAGGGGATCATCAGTTCCATCAACAGAACAGCATGCAATGAATTCTCAAGTTTCCAAAGAGGCAGGGGAAGAAAGTTTTTATGACACAGGAGGGTCAACAATATCAAACCAAATTATTAAACCAGTAGGAGAAGAACATGAACAAGAAATTTCAATGGATGATATATGGAAAGATATTGATCTGTCAGAAGAGAACAGTCTGCATAATGAAGAAGCAGTCTGCAATAATAATAATAATAATAACATATCTTATTTACCAAAGACTTCTCAATCATGGGAGTATAATTCCTCAGACTCACTATGGGTGATGGATGCAGAAAGTATGTTATTCCCTGAGGTTCCTATGATTGATGACCCTTATTTTTCTTGCTATACTAATTAG 726 0.3691 MVQSDEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPNEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQDKKRGSSVPSTEQHAMNSQVSKEAGEESFYDTGGSTISNQIIKPVGEEHEQEISMDDIWKDIDLSEENSLHNEEAVCNNNNNNNISYLPKTSQSWEYNSSDSLWVMDAESMLFPEVPMIDDPYFSCYTN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04380 241 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Trre11g04380 241 SMART sant 8 58 IPR001005 -
Trre11g04380 241 SMART sant 61 109 IPR001005 -
Trre11g04380 241 MobiDBLite consensus disorder prediction 121 149 - -
Trre11g04380 241 CDD SANT 64 107 IPR001005 -
Trre11g04380 241 FunFam MYB transcription factor 64 131 - -
Trre11g04380 241 CDD SANT 11 56 IPR001005 -
Trre11g04380 241 Gene3D - 9 61 - -
Trre11g04380 241 Gene3D - 64 137 - -
Trre11g04380 241 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Trre11g04380 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Trre11g04380 241 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Trre11g04380 241 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Trre11g04380 241 FunFam Myb transcription factor 9 61 - -
Trre11g04380 241 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 187 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre11g04380 241 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Trre11g04380 241 MobiDBLite consensus disorder prediction 108 149 - -
Trre11g04380 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04380 Trre-Chr11 56282004 56283263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04380 1 221 MYB Transcription Factor Family AT5G59780 59.459 1.28e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g04380 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04380 K09422 - mnt:21394127 280.796