Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04378 ATGTCTAATTTGAGTATAGAAGATATTTTAATAATTCTTGTAGTATTAGTATTATGCTGCATAATACTAAGTCAATGGCAAGCTATCAAATGTCTCTTGTGTAAAGCTATCACTATAATTTCAAGTTCAATATCAAATTCAAGTGCTCCTCCTCCTATAAATAGGATTGAGTGGCAATTTCAAGATTACTCTATTCCTCAAAATTCTTCACCACAATTTCAAGGTAGTGACTTGGAACTATCTATTATAAACTCTCTTCCTATCTATCAATTTAAGAAAAATGAGACACAAGAAAAGACAGCTAATGTTGACTGTCCTATTTGTTTGGGGGAATATGAAGAAGGGGAATGGCTAAAACTGCTTCCTAGTTGTAAACATGGTTTCCATGTTTCATGCATTGACAAGTGGTTTCAACTGCATTCAAGTTGTCCCTTGTGTAGAGCTCGTGTACAAGTTGCAAACAAAGAATGTTCTGTGTCTTTTAGAACTTGGCTAGAAATTTTGGGGATGGATGACAGTACTCCTGAAAGGAGTGCACATTTTCAATCTCATTCCCTCTAA 561 0.3476 MSNLSIEDILIILVVLVLCCIILSQWQAIKCLLCKAITIISSSISNSSAPPPINRIEWQFQDYSIPQNSSPQFQGSDLELSIINSLPIYQFKKNETQEKTANVDCPICLGEYEEGEWLKLLPSCKHGFHVSCIDKWFQLHSSCPLCRARVQVANKECSVSFRTWLEILGMDDSTPERSAHFQSHSL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04378 186 Pfam Ring finger domain 104 147 IPR001841 -
Trre11g04378 186 CDD RING-H2_EL5-like 104 147 - -
Trre11g04378 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 14 154 - -
Trre11g04378 186 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Trre11g04378 186 SUPERFAMILY RING/U-box 83 153 - -
Trre11g04378 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 154 IPR013083 -
Trre11g04378 186 SMART ring_2 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04378 Trre-Chr11 56265537 56266097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04378 2 152 C3H Transcription Factor Family AT1G72220 33.553 1.06e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04378 - - psat:127087132 234.572