Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04377 ATGGCTCCACCTAAAGGTGATGTTTCAAAGAAGGCCGATCCAAAGGCACAGGCCTTGAAAGCTGCTAAGGCAGTGAAATCGGGCACTGCTATTAAGAAAAAGGCAAAGAAGATCAGGACAACTGTTACATTCCACAGGCCAAAGACAATGTCAAAGGAGAGGAACCCCAAATACCCTCGCATCAGTGCTCCACCAAGGAACAAGCTTGATCATTATCAGATTCTGAAATATCCTCTCACCACCGAGTCTGCTATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGAGAGCTGACAAAAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACATTGATCAGGCCCGATGGCACCAAGAAGGCCTATGTAAGGTTGACACCTGATTATGATGCTTTGGATGTAGCAAACAAGATTGGAATTATTTAA 465 0.428 MAPPKGDVSKKADPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTMSKERNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04377 154 MobiDBLite consensus disorder prediction 42 65 - -
Trre11g04377 154 MobiDBLite consensus disorder prediction 1 26 - -
Trre11g04377 154 Pfam Ribosomal protein L23, N-terminal domain 15 64 IPR005633 -
Trre11g04377 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 GO:0019843
Trre11g04377 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre11g04377 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre11g04377 154 NCBIfam 50S ribosomal protein L23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Trre11g04377 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre11g04377 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 8 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trre11g04377 154 Gene3D - 35 154 IPR012677 -
Trre11g04377 154 FunFam 60S ribosomal protein L23a 32 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04377 Trre-Chr11 56262509 56264022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04377 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 6.76e-69 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04377 K02893 - jre:109003029 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04377 11 56262509 56264022 Trre7g03378 7 39065656 39067079 PCT