Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04361 ATGAATGCATACTCCAATTCCAACAATATTATTCCATTCTCAACACCCTTTCTTAATCTTCCATCTCCTTCTCCACTTATTGTGCAACAAGACCACTCCATCGCCGAGTTCGACTCGCATCACGACACTCTATCTCAACTCAACAACTCCGAATTGAGCAGTGGTTATAGTAGCTATGGTGGATCACCTTCACCAAGTACTCCCATAAGCTTGATGCAGAGGAGTATTAGCAGCCATTCCCTTCATCACAATAATGGGACTCACCATCATCCCTTTTCAGCTTTTTTTGCTGAATTGCTCGAATCGGAAGATACTCCGGTGAGGAAAGTTTGTAGTACTGGCGACTTGCAGAGGATTAATGGAATGCAACATAATCATCATCATGTGGATAGTCCATTGTCTAGTGAAAGTAGTATGATCATAGAAGGTATGAGCAGAGTTTGTCCATATAGCCCAGAAGAGAAGAAAGTCAGAATTGAGAGATACAGAACAAAGAGAAATCAGAGGAACTTCAACAAGAAAATTAAGTATGTTTGCAGGAAGACATTGGCAGATAGGAGGCCACGAATTAGAGGACGGTTTGCGAGGAATGATGAAATTGATAAGACGGCTAAAGTTGAGTGGAGCCACATTGGTGGTGGAGAGGAAGAGGATGAAGAAGATGAGAATTGGATCAATATATTTGATTCCATAGTTGCTGCAAATCTTGTTCATGATGAGTTTGAAGGCAGTTCCTCCTTTGGTCTATTGTATTAG 756 0.4127 MNAYSNSNNIIPFSTPFLNLPSPSPLIVQQDHSIAEFDSHHDTLSQLNNSELSSGYSSYGGSPSPSTPISLMQRSISSHSLHHNNGTHHHPFSAFFAELLESEDTPVRKVCSTGDLQRINGMQHNHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRTKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKTAKVEWSHIGGGEEEDEEDENWINIFDSIVAANLVHDEFEGSSSFGLLY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04361 251 Pfam CCT motif 157 197 IPR010402 GO:0005515
Trre11g04361 251 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 207 IPR045281 GO:0009909
Trre11g04361 251 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Trre11g04361 251 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04361 Trre-Chr11 56093229 56095572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04361 151 211 C2C2-CO-like Transcription Factor Family AT5G15850 42.623 2.76e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g04361 CCT 2.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04361 - - gmx:100820236 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04361 11 56093229 56095572 Trre11g04361 11 56093229 56095572 ECH
Trre11g04361 11 56093229 56095572 Trre7g01695 7 13063931 13067633 PCT