Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04356 ATGGCAATTAAGGAAGAAGAAACCGGCACCGCCGCACAGAGAGCAGCAGAGTGGGGTTTGGTACTCACAACAGACGCTGAGACTGGGAAACCACAAGGAGTAGCAGTTCGAAACTCCGGCGATGATGAACCTGGTGGAAAATTTGCTTCGAAAAGAAACTCCGGTAGAGCTTCCGGTGACTCTTCCGATGGAGGTGATGCTCGCGGAGGGATACCGAGAGTTTCGGAGGATTTGAAAGATGCTTTATCGGCTTTTCAACAAACATTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACTTCTAAAGAAGTCATAGGAAGAAACTGTCGATTTTTACAGGGTGCGGATACGGATCCAAATGACGTGGCAAAAATAAGGGAAGCGTTGGAAACTGGGAAAAGTTATTGTGGAAGGTTACTGAATTACAAGAAGGATGGAACTCCCTTTTGGAACCTTCTTACTATTTCACCTATCAAGGATAATGATGGCAATGTGCTCAAGTTAATTGGAATGTTGGTGGAGGTAAACAAACATACAGAGGGGTCCAAAGAGAAGAAGCTACGTCCAAATGGGTTGCCTGAATCTTTGATTCGATATGATGCTCGCCAGAAAGAGAAGGCTACATCTTCTGTATCTGAGCTACTATTCGCCATGAAACGTCCTCGCGCATTAAGCGAATCCGGACCTCGTCCCTTTATCAGAAAATCAGGTGGAGGTTCTGAAGAAGATGAAGAAGCAGAGAAAGTAGAACACAAATCAAGGAGAAATTCTGATAGTGTAGCTTCTTTTAGACTAAAATCACAAAGAAAAAGTAGAAGTTCAATGGAACGAATCAGTGAGCTACCTGAAAATCAACCCAAAAACTCTAATCACCATTCTTTCATGGGGTTCATGAGGAAAAGTCAGTCCATCGATGAAAACATCGATGGTGAAGAAATTGTATATGAGAGCTCTGAGAGTGACGATGATGAGGGGACCGATAGTTTTGAATTTGATGACAAAGAAAAGCTAAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACTACACTTGAGCGTATTGAGAAAAACTTTGTCATTACCGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATACAGTCGCGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGAAACTGTGAAAAAAATTAGACAAGCAATTGACAACCAAACAGAAGTTACTGTGCAACTGATCAATTACACAAGAACTGGGAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCATAAGGGAGAAGTACAATATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAACCTCTTCACAATTGCATTCAAGAAGATACTGCAAAAGAGGGAGAACTATTGGTAAAAGAAACTGCGGAAAATGTTGGTGAGGCAGTGAGAGAACTTCCGGATGCTAATCAGAAACCAGATGATTTATGGATGAATCATTCAAAAGTGGTTCACCCTAAACCTCATAGGAAGGATGATGTTCCTTGGAAAGCAATCCAAAAGATTATAGAAAGTGGAGAACAAATAAGCCTAAAGCACTTTAGGCCAATTAAACCTTTAGGATCCGGAGACACCGGAAGCGTGCATCTGGTAGAGCTTGAAGGAACTGGTCAGTACTTTGCCATGAAGGCTATGGATAAGGGCGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTATCCTGGTGGAGAACTATTCCTGCTTCTTGACCAACAACCAACAAAGGTTCTCAAGGAAGATGCTGTCAGATTTTATGCTGCTGAGGTACTAATTGCATTGGAGTACCTTCACTGTCAAGGTATAATTTATCGGGATTTAAAGCCGGAAAATGTGTTGATCCAGAGCAATGGCCATGTATCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTATTCTTCCAACTTCAGAGGAAAAGAAGAAGAGGAAGAAAAAGAAGAAGAAGGGACAGCAAAAAAGTCCAGAGGTTCCTATGTTTATGGCGGAACCAATGAGAGCGTCTAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCTGTAGATTGGTGGGCTTTAGGTATTCTTCTATATGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGACAAAAGACATTTGCAAATATTCTTCATAAAGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCCCCAAGCAAAGCAGCTAATTTACCAATTGTTGCATAGAGATCCCAAAAATAGATTGGGTACACTTGAAGGAGCAAATGAAATTAAGTGTCATCCATTCTTCAAAAATGTCAATTGGGCACTAATTCGTTGCATGAAACCACCTGAGCTTGATGCTCCTATCTTACTAGAAAATGATGAAAAGAAAGAAGCCAAAAATATTGACCCTGGCCTAGATGATTTACAAAAAAATATTTTCTGA 2697 0.4064 MAIKEEETGTAAQRAAEWGLVLTTDAETGKPQGVAVRNSGDDEPGGKFASKRNSGRASGDSSDGGDARGGIPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDVAKIREALETGKSYCGRLLNYKKDGTPFWNLLTISPIKDNDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSVSELLFAMKRPRALSESGPRPFIRKSGGGSEEDEEAEKVEHKSRRNSDSVASFRLKSQRKSRSSMERISELPENQPKNSNHHSFMGFMRKSQSIDENIDGEEIVYESSESDDDEGTDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVKKIRQAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIQEDTAKEGELLVKETAENVGEAVRELPDANQKPDDLWMNHSKVVHPKPHRKDDVPWKAIQKIIESGEQISLKHFRPIKPLGSGDTGSVHLVELEGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDAVRFYAAEVLIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLILPTSEEKKKRKKKKKKGQQKSPEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPQAKQLIYQLLHRDPKNRLGTLEGANEIKCHPFFKNVNWALIRCMKPPELDAPILLENDEKKEAKNIDPGLDDLQKNIF 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04356 898 Pfam PAS domain 95 190 IPR000014 -
Trre11g04356 898 Pfam PAS domain 380 472 IPR000014 -
Trre11g04356 898 Pfam Protein kinase domain 560 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04356 898 FunFam Putative LOV domain-containing protein 642 865 - -
Trre11g04356 898 MobiDBLite consensus disorder prediction 24 73 - -
Trre11g04356 898 MobiDBLite consensus disorder prediction 240 308 - -
Trre11g04356 898 SMART pas_2 76 145 IPR000014 -
Trre11g04356 898 SMART pas_2 359 428 IPR000014 -
Trre11g04356 898 Gene3D Transferase(Phosphotransferase) domain 1 642 876 - -
Trre11g04356 898 Gene3D PAS domain 88 241 - -
Trre11g04356 898 ProSitePatterns Protein kinases ATP-binding region signature. 564 587 IPR017441 GO:0005524
Trre11g04356 898 ProSiteProfiles PAS repeat profile. 74 145 IPR000014 -
Trre11g04356 898 Gene3D PAS domain 346 510 - -
Trre11g04356 898 SUPERFAMILY PYP-like sensor domain (PAS domain) 373 472 IPR035965 -
Trre11g04356 898 PANTHER FLIPPASE KINASE 1-RELATED 66 872 - -
Trre11g04356 898 FunFam LOV domain-containing protein 557 641 - -
Trre11g04356 898 ProSiteProfiles PAC domain profile. 431 485 IPR000700 -
Trre11g04356 898 SMART pac_2 151 193 IPR001610 -
Trre11g04356 898 SMART pac_2 434 476 IPR001610 -
Trre11g04356 898 FunFam Putative LOV domain-containing protein 88 244 - -
Trre11g04356 898 ProSiteProfiles PAC domain profile. 148 202 IPR000700 -
Trre11g04356 898 FunFam LOV domain-containing protein 346 510 - -
Trre11g04356 898 CDD STKc_phototropin_like 556 872 - -
Trre11g04356 898 MobiDBLite consensus disorder prediction 251 274 - -
Trre11g04356 898 SUPERFAMILY PYP-like sensor domain (PAS domain) 95 187 IPR035965 -
Trre11g04356 898 MobiDBLite consensus disorder prediction 293 308 - -
Trre11g04356 898 SUPERFAMILY Protein kinase-like (PK-like) 537 870 IPR011009 -
Trre11g04356 898 ProSiteProfiles PAS repeat profile. 357 430 IPR000014 -
Trre11g04356 898 CDD PAS 101 190 IPR000014 -
Trre11g04356 898 SMART serkin_6 558 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04356 898 CDD PAS 372 472 IPR000014 -
Trre11g04356 898 ProSiteProfiles Protein kinase domain profile. 558 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04356 898 NCBIfam PAS domain S-box protein 382 472 IPR000014 -
Trre11g04356 898 NCBIfam PAS domain S-box protein 101 194 IPR000014 -
Trre11g04356 898 Gene3D Phosphorylase Kinase; domain 1 557 880 - -
Trre11g04356 898 MobiDBLite consensus disorder prediction 720 739 - -
Trre11g04356 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04356 Trre-Chr11 56040507 56049407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04356 2 898 AGC Kinase Gene Family AT3G45780 72.448 0.0 1293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre11g04356 Pkinase 4.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04356 K20715 - gmx:100817565 1444.1