Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04355 ATGAATCTTCTGAAGAAATCTCCATCGTCGTCATCATCAACAACAACATCATCATCATCAACAACAACGAGACCATCATTTCCGAGAGATCCTCGCGGATCCCTCGAAGTATTCAATCCAACAAGCAACTCAAACTCACCGGTACGTTCTCCGCCAAACTTGAAAACTTGGACGGAAACAGAAGAGGTAGCAGCAAGAAACGAATTCTCCGATGAAGTCACCACCACCAACACTTCATGGATGGCAATTAAGGAAGAAGAAACCGGCACCGCCGCACAGAGAGCAGCAGAGTGGGGTTTGGTACTCACAACAGACGCTGAGACTGGGAAACCACAAGGAGTAGCAGTTCGAAACTCCGGCGATGATGAACCTGGTGGAAAATTTGCTTCGAAAAGAAACTCCGGTAGAGCTTCCGGTGACTCTTCCGATGGAGGTGATGCTCGCGGAGGGATACCGAGAGTTTCGGAGGATTTGAAAGATGCTTTATCGGCTTTTCAACAAACATTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACTTCTAAAGAAGTCATAGGAAGAAACTGTCGATTTTTACAGGGTGCGGATACGGATCCAAATGACGTGGCAAAAATAAGGGAAGCGTTGGAAACTGGGAAAAGTTATTGTGGAAGGTTACTGAATTACAAGAAGGATGGAACTCCCTTTTGGAACCTTCTTACTATTTCACCTATCAAGGATAATGATGGCAATGTGCTCAAGTTAATTGGAATGTTGGTGGAGGTAAACAAACATACAGAGGGGTCCAAAGAGAAGAAGCTACGTCCAAATGGGTTGCCTGAATCTTTGATTCGATATGATGCTCGCCAGAAAGAGAAGGCTACATCTTCTGTATCTGAGCTACTATTCGCCATGAAACGTCCTCGCGCATTAAGCGAATCCGGACCTCGTCCCTTTATCAGAAAATCAGGTGGAGGTTCTGAAGAAGATGAAGAAGCAGAGAAAGTAGAACACAAATCAAGGAGAAATTCTGATAGTGTAGCTTCTTTTAGACTAAAATCACAAAGAAAAAGTAGAAGTTCAATGGAACGAATCAGTGAGCTACCTGAAAATCAACCCAAAAACTCTAATCACCATTCTTTCATGGGGTTCATGAGGAAAAGTCAGTCCATCGATGAAAACATCGATGGTGAAGAAATTGTATATGAGAGCTCTGAGAGTGACGATGATGAGGGGACCGATAGTTTTGAATTTGATGACAAAGAAAAGCTAAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACTACACTTGAGCGTATTGAGAAAAACTTTGTCATTACCGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATACAGTCGCGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGAAACTGTGAAAAAAATTAGACAAGCAATTGACAACCAAACAGAAGTTACTGTGCAACTGATCAATTACACAAGAACTGGGAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCATAAGGGAGAAGTACAATATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAACCTCTTCACAATTGCATTCAAGAAGATACTGCAAAAGAGGGAGAACTATTGGTAAAAGAAACTGCGGAAAATGTTGGTGAGGCAGTGAGAGAACTTCCGGATGCTAATCAGAAACCAGATGATTTATGGATGAATCATTCAAAAGTGGTTCACCCTAAACCTCATAGGAAGGATGATGTTCCTTGGAAAGCAATCCAAAAGATTATAGAAAGTGGAGAACAAATAAGCCTAAAGCACTTTAGGCCAATTAAACCTTTAGGATCCGGAGACACCGGAAGCGTGCATCTGGTAGAGCTTGAAGGAACTGGTCAGTACTTTGCCATGAAGGCTATGGATAAGGGCGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTATCCTGGTGGAGAACTATTCCTGCTTCTTGACCAACAACCAACAAAGGTTCTCAAGGAAGATGCTGTCAGATTTTATGCTGCTGAGGTACTAATTGCATTGGAGTACCTTCACTGTCAAGGTATAATTTATCGGGATTTAAAGCCGGAAAATGTGTTGATCCAGAGCAATGGCCATGTATCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTATTCTTCCAACTTCAGAGGAAAAGAAGAAGAGGAAGAAAAAGAAGAAGAAGGGACAGCAAAAAAGTCCAGAGGTTCCTATGTTTATGGCGGAACCAATGAGAGCGTCTAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCTGTAGATTGGTGGGCTTTAGGTATTCTTCTATATGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGACAAAAGACATTTGCAAATATTCTTCATAAAGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCCCCAAGCAAAGCAGCTAATTTACCAATTGTTGCATAGAGATCCCAAAAATAGATTGGGTACACTTGAAGGAGCAAATGAAATTAAGTGTCATCCATTCTTCAAAAATGTCAATTGGGCACTAATTCGTTGCATGAAACCACCTGAGCTTGATGCTCCTATCTTACTAGAAAATGATGAAAAGAAAGAAGCCAAAAATATTGACCCTGGCCTAGATGATTTACAAAAAAATATTTTCTGA 2937 0.4099 MNLLKKSPSSSSSTTTSSSSTTTRPSFPRDPRGSLEVFNPTSNSNSPVRSPPNLKTWTETEEVAARNEFSDEVTTTNTSWMAIKEEETGTAAQRAAEWGLVLTTDAETGKPQGVAVRNSGDDEPGGKFASKRNSGRASGDSSDGGDARGGIPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDVAKIREALETGKSYCGRLLNYKKDGTPFWNLLTISPIKDNDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSVSELLFAMKRPRALSESGPRPFIRKSGGGSEEDEEAEKVEHKSRRNSDSVASFRLKSQRKSRSSMERISELPENQPKNSNHHSFMGFMRKSQSIDENIDGEEIVYESSESDDDEGTDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVKKIRQAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIQEDTAKEGELLVKETAENVGEAVRELPDANQKPDDLWMNHSKVVHPKPHRKDDVPWKAIQKIIESGEQISLKHFRPIKPLGSGDTGSVHLVELEGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDAVRFYAAEVLIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLILPTSEEKKKRKKKKKKGQQKSPEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPQAKQLIYQLLHRDPKNRLGTLEGANEIKCHPFFKNVNWALIRCMKPPELDAPILLENDEKKEAKNIDPGLDDLQKNIF 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04355 978 SUPERFAMILY PYP-like sensor domain (PAS domain) 453 552 IPR035965 -
Trre11g04355 978 Gene3D PAS domain 168 321 - -
Trre11g04355 978 MobiDBLite consensus disorder prediction 320 388 - -
Trre11g04355 978 Gene3D Transferase(Phosphotransferase) domain 1 722 956 - -
Trre11g04355 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Trre11g04355 978 MobiDBLite consensus disorder prediction 104 153 - -
Trre11g04355 978 MobiDBLite consensus disorder prediction 1 28 - -
Trre11g04355 978 ProSiteProfiles PAC domain profile. 228 282 IPR000700 -
Trre11g04355 978 FunFam Putative LOV domain-containing protein 722 945 - -
Trre11g04355 978 SMART serkin_6 638 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04355 978 SUPERFAMILY PYP-like sensor domain (PAS domain) 175 267 IPR035965 -
Trre11g04355 978 SMART pas_2 439 508 IPR000014 -
Trre11g04355 978 SMART pas_2 156 225 IPR000014 -
Trre11g04355 978 Pfam PAS domain 175 270 IPR000014 -
Trre11g04355 978 Pfam PAS domain 460 552 IPR000014 -
Trre11g04355 978 ProSiteProfiles PAS repeat profile. 437 510 IPR000014 -
Trre11g04355 978 ProSiteProfiles PAS repeat profile. 154 225 IPR000014 -
Trre11g04355 978 ProSiteProfiles PAC domain profile. 511 565 IPR000700 -
Trre11g04355 978 PANTHER FLIPPASE KINASE 1-RELATED 530 952 - -
Trre11g04355 978 FunFam LOV domain-containing protein 637 721 - -
Trre11g04355 978 MobiDBLite consensus disorder prediction 373 388 - -
Trre11g04355 978 MobiDBLite consensus disorder prediction 331 354 - -
Trre11g04355 978 ProSitePatterns Protein kinases ATP-binding region signature. 644 667 IPR017441 GO:0005524
Trre11g04355 978 Gene3D PAS domain 426 590 - -
Trre11g04355 978 ProSiteProfiles Protein kinase domain profile. 638 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04355 978 CDD STKc_phototropin_like 636 952 - -
Trre11g04355 978 FunFam LOV domain-containing protein 426 590 - -
Trre11g04355 978 Pfam Protein kinase domain 640 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04355 978 SMART pac_2 514 556 IPR001610 -
Trre11g04355 978 SMART pac_2 231 273 IPR001610 -
Trre11g04355 978 FunFam Putative LOV domain-containing protein 168 324 - -
Trre11g04355 978 SUPERFAMILY Protein kinase-like (PK-like) 617 950 IPR011009 -
Trre11g04355 978 NCBIfam PAS domain S-box protein 462 552 IPR000014 -
Trre11g04355 978 NCBIfam PAS domain S-box protein 181 274 IPR000014 -
Trre11g04355 978 CDD PAS 181 270 IPR000014 -
Trre11g04355 978 Gene3D Phosphorylase Kinase; domain 1 637 960 - -
Trre11g04355 978 CDD PAS 452 552 IPR000014 -
Trre11g04355 978 MobiDBLite consensus disorder prediction 1 55 - -
Trre11g04355 978 MobiDBLite consensus disorder prediction 36 55 - -
Trre11g04355 978 MobiDBLite consensus disorder prediction 800 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04355 Trre-Chr11 56040267 56049407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04355 22 978 AGC Kinase Gene Family AT3G45780 68.290 0.0 1318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre11g04355 Pkinase 5.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04355 K20715 - gmx:100817565 1488.4