Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04354 ATGTCACCAAGTTTCATCTTCGAAGCTGCCAGCGACGAAGAAAACGAATTCTCCGAACACGAATCAGACGAAGAAGAATCACAATCAGCATCAGAAGGAGGAGAATCAGAATCAGAAAATGAGCGCATAGAACCGCGAGTTTCAAAGAAGAAAACAGTGTCTCCATGGGACTTCACTAAATACACTGAATCAGTTGCTGAAGAACACGCTCGCAGAAGTACAACATCAGTACAAGATAAAATTTATGCCGTCAAACAACGTTCAGCGCCGGTCGTTGCTTTACCTGACTCCGACGATGATAGTTGCTCTGACGCCGAAGCTGATAAACAAGAAGATTATCAAGAAGAAGAAGAAGAAGATGAAGAAGAGGGTAATGCTGGGGACAAAAAGTCCTTTTTTGCTCCTTCCGATGGAACATCTTTCAGCGCTGATTCGTTCTTGCAACTCAATTTGTCTCGCCCTTTACTAATGGCTTGTGCGGACTTGGGGTTTACTAAACCAACACCAATTCAGGCGGCTTGCATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACTGCTGCATTTGCACTACCTACTTTAGAGAGGTTGCTGTACCGTCCAAAACGCATGAATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCACAGTATGATTGGGAAGCTTGCTATTCATACTGATATAAGGTGTTGCCTGATTGTTGGTGGTCTGTCAACAAAGGATCAAGAGGCTGCCTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGGCGCATGATAGACCATTTACGCAATTCTATGTCAGTGGATTTGGATGATCTTTCTGTTTTGATCCTTGATGAAGCAGATCGTCTTTTGGAGCTAGGATTTAGTGCTGAAATTCAGGAACTTGTTCGATTGTGTCCCAAAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACCGAGGAGGTTAATGATCTTATTACACTTTCCCTAACAAAACCCCTGCGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCATCCTTGACTGAGGAGGTGGTTAGATTAAGAAACATGCGTGAAGTGAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCAAAAGTTATCATTTTCAGTGGAACCAAGCAAGCTGCACATAGGTTGAGGATTATATTTGGATTAGCTGGATTGAAAGCTGCTGAGTTTCATGGAAATCTTACTCAGGCCCAACGTCTTGATGCTTTGGACCAATTCAGGAAGCAGCAAGTGGATTTTTTGATTGCAACTGATGTGGCTGCTCGTGGGCTTGACATTATTGGTGTTCAAACCGTTATAAATTTTGCATGTCCACGCGATCTCACCAGCTATGTTCATCGGGTGGGTCGTACTGCAAGAGCTGGAAGAGCAGGATCTGCTATTACATTTGTTACCGATCGTGACCGATCACTTTTAAAATCTATTATAAAGAGGGCTGGTTCAAAGTTGAAAAAACGCACTGTTGCTGAGCAATCTATATTAAAATGGTCTCAAGTAATTGAGCAAATGGAGGATCAGATTTCTGAAGTACTTGAAGAAGAGAGGGAAGAAAGGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGAACATAGGGAAGATATCTACTCCCGCCCGAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGGTTTCGGCAAAAGCAGCAAAGGCATCCTTGGATAAGGAAGACGGTTCTTCTCGTAAGGTGGTTAGTGCCCAGCAAGCTGAAGACCTAAAATTGAAGGAAAAGAGGAAGCGGGAACGAGAGAAAAATTTGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGACGAGCAAGATGACAAACCAAGAGGTAAGGGGACAGATAAGAATGAAAAGGCTGGTTTGACACTTGCTGATCTTGCTTACCGACGTGCAAAAGCAGTAAAGGCCACCAAGAGGGCACTAGACTCTGGCAAGATTGTGAAGAAGCCTCAAAAGAAATCTAATAAATCTAATCCTTCGCGAAAGCCTTCCTCTTCAAGGACAGAAGACATGCGGGAGGCATTCCAAAATGACATGAAGGATAAAAAACCAAAACAGAGAGGTATCGATAGAAATATTAATTTCATTGTTGATCGACTCATAAAAATGTCTTCTGTGATTGATCATTGA 2262 0.431 MSPSFIFEAASDEENEFSEHESDEEESQSASEGGESESENERIEPRVSKKKTVSPWDFTKYTESVAEEHARRSTTSVQDKIYAVKQRSAPVVALPDSDDDSCSDAEADKQEDYQEEEEEDEEEGNAGDKKSFFAPSDGTSFSADSFLQLNLSRPLLMACADLGFTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRMNAIRVLILTPTRELAAQVHSMIGKLAIHTDIRCCLIVGGLSTKDQEAALRTMPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVNDLITLSLTKPLRLSADPSAKRPASLTEEVVRLRNMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLRIIFGLAGLKAAEFHGNLTQAQRLDALDQFRKQQVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAITFVTDRDRSLLKSIIKRAGSKLKKRTVAEQSILKWSQVIEQMEDQISEVLEEEREERILRKAEMEATKAENMIEHREDIYSRPKRTWFVTEKEKKVSAKAAKASLDKEDGSSRKVVSAQQAEDLKLKEKRKREREKNLPRKKRRKLEAAREMLEDDEQDDKPRGKGTDKNEKAGLTLADLAYRRAKAVKATKRALDSGKIVKKPQKKSNKSNPSRKPSSSRTEDMREAFQNDMKDKKPKQRGIDRNINFIVDRLIKMSSVIDH 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04354 753 MobiDBLite consensus disorder prediction 630 662 - -
Trre11g04354 753 MobiDBLite consensus disorder prediction 99 124 - -
Trre11g04354 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 523 IPR001650 -
Trre11g04354 753 Gene3D - 351 522 IPR027417 -
Trre11g04354 753 CDD SF2_C_DEAD 361 493 - -
Trre11g04354 753 SMART ultradead3 163 364 IPR014001 -
Trre11g04354 753 MobiDBLite consensus disorder prediction 707 733 - -
Trre11g04354 753 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 101 702 - -
Trre11g04354 753 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 295 303 IPR000629 -
Trre11g04354 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 349 IPR027417 -
Trre11g04354 753 MobiDBLite consensus disorder prediction 588 734 - -
Trre11g04354 753 SMART helicmild6 399 484 IPR001650 -
Trre11g04354 753 Coils Coil 608 628 - -
Trre11g04354 753 MobiDBLite consensus disorder prediction 12 32 - -
Trre11g04354 753 Coils Coil 522 569 - -
Trre11g04354 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 499 IPR027417 -
Trre11g04354 753 Pfam DEAD/DEAH box helicase 168 338 IPR011545 GO:0003676|GO:0005524
Trre11g04354 753 MobiDBLite consensus disorder prediction 1 51 - -
Trre11g04354 753 Gene3D - 91 350 IPR027417 -
Trre11g04354 753 MobiDBLite consensus disorder prediction 588 603 - -
Trre11g04354 753 MobiDBLite consensus disorder prediction 35 51 - -
Trre11g04354 753 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Trre11g04354 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 349 IPR014001 -
Trre11g04354 753 MobiDBLite consensus disorder prediction 675 693 - -
Trre11g04354 753 Pfam Helicase conserved C-terminal domain 381 484 IPR001650 -
Trre11g04354 753 CDD DEADc_DDX27 155 350 - -
Trre11g04354 753 MobiDBLite consensus disorder prediction 88 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04354 Trre-Chr11 56028502 56035836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04354 128 504 Eukaryotic Initiation Factors Gene Family AT3G19760 31.579 3.60e-48 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04354 K13181 - gmx:100791233 956.436