Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04352 ATGAGTTGTTTTTGTTGTGTAGGAAAATCACGAGAAAAGATCGAAAGCAATACCAATTCTTGCCATAGAGAGAAGAAGCAGAGTAATATCAGTTCAGCTGATAAGGTCAAAGTTGATATGCATTTGAATTTGAGTGTGAATGATAAAAGTGAAGATGATTCGAAACACGATCAACTTTCGTTAGACGTGAAGAATTTGAATTTGAACAACGAGGTTTCAACAGATGGAAAAGTTGCAAAGACATTCACTTTTGATGAGCTTGCATCTGCAACAGGAAATTTTAGGGCTGATACCTTTGTTGGTGAAGGAGGGTTTGGCAAGGTTTATAAGGGATACATTGAGAGAATTAATCAGGTTGTTGCAATAAAGCAACTTGACCCGAACGGGCTTCAAGGAATAAGGGAATTCGTTGTTGAAGTGTTAACACTTAGTTTGGCAGACCACCAAAACCTTGTCAAGTTATTAGGGTTTTGTGCCGAAGGAGAGCAGAGGCTATTGGTGTACGAGTACATGCCATTGGGATCTTTGGAGAATCATTTGCATGACCTTTCGCCCGGAAAAAACCCACTGGATTGGAATACAAGAATGAAAATAGCTGCTGGTGCAGCTAGAGGTTTGGAGTATTTGCATGACAAAATGAAGCCACCAGTCATATACCGCGACCTGAAATGCTCCAACATTTTGTTAGGCGACGATTATCATCCCAAGTTATCTGATTTTGGCTTGGCGAAAGTAGGTCCAATTGGTGATAAGACTCATGTTTCGACAAGAGTTATGGGCACATATGGGTACTGTGCTCCAGATTACGCAATGACGGGTCAATTGACATTCAAGTCCGACATTTACAGCTTTGGTGTTGTTCTCTTGGAGCTCATCACAGGCAGGAAGGCCATCGATCAGAGGAAACCTCATAAAGAACAAAATCTTGTCGCATGGGCAAGGCCTTTATTCAGAGACCGAAGAAGATTCTCGCAGATGGTTGATCCATTGCTTGAAGGTCAATATCCAGTGAGGGGTTTGTACCAATCTCTTGCTATTGCTGCTATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTGTTATATCCGATGTGGTCACGGCTCTAAATTACCTTGCTTCGCAAATATATGATCCACAAATTCATCCGATACAAAGCTCTAGAAGACGTTCATCTTCCCCAAGAAGGAGTGAAGGTCATAGACGTGTTTCTAGTAATGACTCGGAGACGTCAGACAGATTGGGAGATTAG 1248 0.4199 MSCFCCVGKSREKIESNTNSCHREKKQSNISSADKVKVDMHLNLSVNDKSEDDSKHDQLSLDVKNLNLNNEVSTDGKVAKTFTFDELASATGNFRADTFVGEGGFGKVYKGYIERINQVVAIKQLDPNGLQGIREFVVEVLTLSLADHQNLVKLLGFCAEGEQRLLVYEYMPLGSLENHLHDLSPGKNPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGDDYHPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDQRKPHKEQNLVAWARPLFRDRRRFSQMVDPLLEGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQIYDPQIHPIQSSRRRSSSPRRSEGHRRVSSNDSETSDRLGD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04352 415 SUPERFAMILY Protein kinase-like (PK-like) 80 396 IPR011009 -
Trre11g04352 415 FunFam probable serine/threonine-protein kinase RLCKVII 66 170 - -
Trre11g04352 415 CDD STKc_IRAK 100 369 - -
Trre11g04352 415 PANTHER OS07G0668900 PROTEIN 3 379 - -
Trre11g04352 415 MobiDBLite consensus disorder prediction 381 415 - -
Trre11g04352 415 FunFam Serine/threonine-protein kinase PBS1 171 386 - -
Trre11g04352 415 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Trre11g04352 415 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04352 415 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04352 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Trre11g04352 415 Gene3D Transferase(Phosphotransferase) domain 1 171 385 - -
Trre11g04352 415 Pfam Protein tyrosine and serine/threonine kinase 98 366 IPR001245 GO:0004672|GO:0006468
Trre11g04352 415 MobiDBLite consensus disorder prediction 390 415 - -
Trre11g04352 415 Gene3D Phosphorylase Kinase; domain 1 78 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04352 Trre-Chr11 56019344 56021806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04352 1 373 Glycoside Hydrolase AT3G07070 55.080 3.13e-149 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre11g04352 PK_Tyr_Ser-Thr 4.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04352 - - gmx:100794680 628.246