Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04338 ATGCAAAGATCAGGTTTTGGTTCGGATGGAATATACAGGTCTCTAAGACCTTCCCTTACCTTACCAAAAAACCCGAACCTCTCTCTCGTTACACACTTATTCAACAAAGTCGCTTCTTCTCTAAACAAAACCGCTCTTATAGATGCCGACTCTTACCAAACCCTAACTTTCGCTCAATTAAAATCACTAACAATTAAACTCGCACATGCTTTAATCCACATCGGTATAAAAAAAACCGACGTCGTTTTATTCGTTGCTCCAAATAGTTATCTCTACCCTGTTTTCTTCCTCGCCGTTGCTTCCATCGGCGCCGTCGCCTCCACCGTCAATCCGACTTACACCACCATCGAAGTCTCAAAACAAGCAAAAGATTCAAATCCGAAGCTCATCATCACAGTCGCTGAATTATGGGAGAAAGTCAAACACCTCAATGTCCCCGCCGTTTTTCTCAATTCCGGCACGACGCCGACACCGAATGTTACGAGTTTAGAATCGTTCATCAAACTCGGTGAATCGGAAACTAAATTTCCGGAAATTGATTTGAAGCAGAGCGATACGGCGGCGCTTTTGTATTCCTCCGGTACGACAGGTGTAAGCAAAGGTGTAATTCTCACGCACGGGAATTTCATCGCTTCTGCATCGATGATTTCGATGGATGATGAATTGAATGGAGATATAAACGATGTGTATCTCGTTGTTCTTCCAATGTTTCATGTTTTTGGACTTGCGGTGATTACGTTTTCTCAGCTTGTGAGAGGTAACACTGTGGTTTCGTTGAAGAGATTTGAATTTGAAGTGGTTTTGAAAACTATTGAGAAATTTAGGGTTACGAGATTATGGGTTGTGCCTCCTATTATACTTGCTCTTGCTAAAAATGGTTTGGTTGATAAGTATAATCTTTCTTCTTTGAAATATATTGGTTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGGAAGAGTGTGCTAAGCGATTCCCTCATGCTGTTGTTTCTCAGGGCTATGGTATGACTGAAACTTCTGGGATTGTTTCTGTGGAGAATCCAAGGATGGGGATTCGGCATACTGGCTCAGCTGGAATGCTTGTTGCTGGAGTGGAAGCTCAAATTGTCAGTGTGGATACACTGAAGCCACTCCCTCCTGGACAGCTTGGTGAGATATGGGTACGGGGTCCTAACATGATGCGAGGTTATCATAATAATCCACAGGCCACAAGATTAACTATAGATGACAAAGGGTGGGTACATACAGGAGATCTTGGATACTTTGATGAGGATGGCCATCTTTTTGTCGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATCCTGAAATACTTGATGCTGTGGTTATTCCATTCCCTGATGCTGAAGCCGGTGAGGTTCCTGTTGCCTATGTTGTACGATCACCCAATAGTTCACTAACCGAGGAAGATATTAAAAAGTTCATTGCTAATCAGGTAGCACCTTTCAAAAGATTGCGAAGGGTAACATTCATCAAAACTGTTCCGAAAACAGCATCAGGAAAAATTCTAAGAAGAGAGCTTATCGACAAAGCGCGATCCAAAATATAA 1617 0.4255 MQRSGFGSDGIYRSLRPSLTLPKNPNLSLVTHLFNKVASSLNKTALIDADSYQTLTFAQLKSLTIKLAHALIHIGIKKTDVVLFVAPNSYLYPVFFLAVASIGAVASTVNPTYTTIEVSKQAKDSNPKLIITVAELWEKVKHLNVPAVFLNSGTTPTPNVTSLESFIKLGESETKFPEIDLKQSDTAALLYSSGTTGVSKGVILTHGNFIASASMISMDDELNGDINDVYLVVLPMFHVFGLAVITFSQLVRGNTVVSLKRFEFEVVLKTIEKFRVTRLWVVPPIILALAKNGLVDKYNLSSLKYIGSGAAPLGKELMEECAKRFPHAVVSQGYGMTETSGIVSVENPRMGIRHTGSAGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMRGYHNNPQATRLTIDDKGWVHTGDLGYFDEDGHLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPFPDAEAGEVPVAYVVRSPNSSLTEEDIKKFIANQVAPFKRLRRVTFIKTVPKTASGKILRRELIDKARSKI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04338 538 CDD 4CL 21 530 - -
Trre11g04338 538 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Trre11g04338 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 533 - -
Trre11g04338 538 Gene3D - 9 435 IPR042099 -
Trre11g04338 538 Pfam AMP-binding enzyme 37 440 IPR000873 -
Trre11g04338 538 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Trre11g04338 538 SUPERFAMILY Acetyl-CoA synthetase-like 24 536 - -
Trre11g04338 538 FunFam 4-coumarate--CoA ligase 2 436 537 - -
Trre11g04338 538 Gene3D - 436 537 IPR045851 -
Trre11g04338 538 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04338 Trre-Chr11 55912319 55915765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04338 1 538 Monolignol Biosynthesis Gene Families AT4G05160 66.360 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04338 K01904 - gmx:100797843 835.869