LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g04333	ATGAATCCTTCAGAGATAGAATCTCTATCAGTTACTTTCCATGGACACGATCTTATAGTTGATTCTGAGTTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGACTGAATGGTTGTGGAAAATCTACCCTACTTACGGCAATAGGTCGCCGTGAGCTTCCTATTCCAGACCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGACGAGGAAAGGCTGAGGTTGGAGAAAGAAGCTGAAATTCTGGGAGCACAAGATGATGGCGGTGGTGAAGCACTTGAACGAGTTTATGAACGATTGGAAGCTATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGCGATTTTTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCCTTGTTTATGAACCCAACGATTCTTCTACTTGATGAACCAACTAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTAATTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCACGTTTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTTGTTGATGTGGGGAAACTTCCCCCACCAGTCCTCCAGTTTGTGGAAGTGACATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATCGACTTTGGGGTCGATTTAGACTCCAGGATTGCTTTGGTTGGACCCAATGGAGCTGGGAAGAGCACGTTCTTGAAACTTATGACCGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGCCATAATCATCTTCGCATTGCACAATTTCACCAGCACTTGACTGAAAAACTAGACCTGGAACTGTCTGCTCTCCAATTTATGATTAAAGAATACCCTGGAAATGAAGAAGAGAGGATGAGAGCAGCTATTGGAAAGTTCGGTTTATCAGGTAAAGCGCAGGTGATGCCTATGAGAAATTTATCCGATGGACAAAGGAGCCGTGTGATCTTTGCATGGTTAGCCTATAGACAGCCTCACTTGCTACTATTAGATGAGCCAACTAATCATTTAGATATCGAGACAATCGACTCGTTAGCTGAGGCATTGAATGAATGGGATGGTGGTATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAGATATGGGTGTGTGCTGATCAAACAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGCAGCATCTAAAGGCAAAGGCAGGTTTAGCTGATTGA	1593	0.4325	MNPSEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGRRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKFYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g04333	530	FunFam	Abc transporter f family member 1	4	268	-	-
	Trre11g04333	530	Gene3D	-	5	268	IPR027417	-
	Trre11g04333	530	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	4	244	IPR003439	GO:0005524
	Trre11g04333	530	Pfam	ABC transporter	215	287	IPR032781	-
	Trre11g04333	530	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	5	525	-	-
	Trre11g04333	530	Coils	Coil	222	242	-	-
	Trre11g04333	530	Gene3D	-	291	528	IPR027417	-
	Trre11g04333	530	ProSitePatterns	ABC transporters family signature.	148	162	IPR017871	GO:0005524\|GO:0016887
	Trre11g04333	530	SMART	AAA_5	28	230	IPR003593	GO:0016887
	Trre11g04333	530	SMART	AAA_5	340	528	IPR003593	GO:0016887
	Trre11g04333	530	FunFam	ATP-binding cassette sub-family F member 3	275	529	-	-
	Trre11g04333	530	Pfam	ABC transporter	331	462	IPR003439	GO:0005524
	Trre11g04333	530	CDD	ABCF_EF-3	315	507	-	-
	Trre11g04333	530	CDD	ABCF_EF-3	5	221	-	-
	Trre11g04333	530	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	5	249	IPR027417	-
	Trre11g04333	530	Pfam	ABC transporter	22	176	IPR003439	GO:0005524
	Trre11g04333	530	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	315	530	IPR003439	GO:0005524
	Trre11g04333	530	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	298	509	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g04333	Trre-Chr11	55852971	55861654	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g04333	315	508	Calmodulin-binding Proteins	AT2G36910	26.222	2.75e-09	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g04333	K06185		-	gmx:100785099	998.423