Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04332 ATGGATTCTGAAGCCAGCAAGAAGAAAGCTGCTCAGAAGAAGGCTGCTGCCGCCGCTAAGAGAGGTGGTAAAGTACCTTCTTCCGCTGCTTCATCGAAAATCGCGTCGGAGAAGGCGGTGGATAGTGTCGCTAACGGAATTGGGGATATTCAGATATCTGATCGCACATGCACCGGTGTCCTCTGTTCTCATCCTCTTTCTAGGGATATTCGGATAGAATCTCTATCAGTTACTTTCCATGGACACGATCTTATAGTTGATTCTGAGTTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGACTGAATGGTTGTGGAAAATCTACCCTACTTACGGCAATAGGTCGCCGTGAGCTTCCTATTCCAGACCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGACGAGGAAAGGCTGAGGTTGGAGAAAGAAGCTGAAATTCTGGGAGCACAAGATGATGGCGGTGGTGAAGCACTTGAACGAGTTTATGAACGATTGGAAGCTATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGCGATTTTTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCCTTGTTTATGAACCCAACGATTCTTCTACTTGATGAACCAACTAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTAATTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCACGTTTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTTGTTGATGTGGGGAAACTTCCCCCACCAGTCCTCCAGTTTGTGGAAGTGACATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATCGACTTTGGGGTCGATTTAGACTCCAGGATTGCTTTGGTTGGACCCAATGGAGCTGGGAAGAGCACGTTCTTGAAACTTATGACCGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGCCATAATCATCTTCGCATTGCACAATTTCACCAGCACTTGACTGAAAAACTAGACCTGGAACTGTCTGCTCTCCAATTTATGATTAAAGAATACCCTGGAAATGAAGAAGAGAGGATGAGAGCAGCTATTGGAAAGTTCGGTTTATCAGGTAAAGCGCAGGTGATGCCTATGAGAAATTTATCCGATGGACAAAGGAGCCGTGTGATCTTTGCATGGTTAGCCTATAGACAGCCTCACTTGCTACTATTAGATGAGCCAACTAATCATTTAGATATCGAGACAATCGACTCGTTAGCTGAGGCATTGAATGAATGGGATGGTGGTATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAGATATGGGTGTGTGCTGATCAAACAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGCAGCATCTAAAGGCAAAGGCAGGTTTAGCTGATTGA 1791 0.4417 MDSEASKKKAAQKKAAAAAKRGGKVPSSAASSKIASEKAVDSVANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGRRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKFYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04332 596 CDD ABCF_EF-3 381 573 - -
Trre11g04332 596 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524|GO:0016887
Trre11g04332 596 Gene3D - 357 594 IPR027417 -
Trre11g04332 596 Pfam ABC transporter 281 353 IPR032781 -
Trre11g04332 596 MobiDBLite consensus disorder prediction 1 32 - -
Trre11g04332 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 575 IPR027417 -
Trre11g04332 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 315 IPR027417 -
Trre11g04332 596 Gene3D - 70 334 IPR027417 -
Trre11g04332 596 FunFam Abc transporter f family member 1 70 334 - -
Trre11g04332 596 SMART AAA_5 94 296 IPR003593 GO:0016887
Trre11g04332 596 SMART AAA_5 406 594 IPR003593 GO:0016887
Trre11g04332 596 CDD ABCF_EF-3 70 287 - -
Trre11g04332 596 Coils Coil 288 308 - -
Trre11g04332 596 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 42 591 - -
Trre11g04332 596 Pfam ABC transporter 397 528 IPR003439 GO:0005524
Trre11g04332 596 FunFam ATP-binding cassette sub-family F member 3 341 595 - -
Trre11g04332 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 596 IPR003439 GO:0005524
Trre11g04332 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 310 IPR003439 GO:0005524
Trre11g04332 596 Pfam ABC transporter 88 242 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04332 Trre-Chr11 55852971 55862616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04332 381 574 Calmodulin-binding Proteins AT2G36910 26.316 1.15e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04332 K06185 - gmx:100785099 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04332 11 55852971 55862616 Trre11g04332 11 55852971 55862616 ECH
Trre11g04332 11 55852971 55862616 Trre7g01561 7 11785800 11789792 PCT